amos

> I was wondering if you have such a script available before I dedicate time to write it myself. We don't have a script to summarize results added to rgi...

@diego00012138 Are you inputting valid FASTA formatted files?

@MicoNick what is the command you used and which version of RGI?

> You're talking about rgi command for heatmap generation, rgi main or something else? Yes, the command for the rgi heatmap.

@MicoNick the `rgi heatmap` only uses `json` files produced by `rgi main`. The `rgi parser` is used for generating `json` files for the RGI wheel on the card.mcmaster.ca website only....

@DeepakNandi can you provide all the commands used and version of rgi?

@EorgeKit Your best bet is to write a custom script. Cheers.

@althonos Thank you, I will merge away!

@mhmism maybe use https://github.com/hallamlab/samsum

@Rainjie-afk Please re-open if you are still experiencing the same issue. Cheers.