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How download TSV file like on the web GWAS Catalog？or any function can do like that？

5

how can I get those? ‘ variant_id p_value chromosome base_pair_location effect_allele other_allele effect_allele_frequency odds_ratio ci_lower ci_upper rs888953847 0.9626 1 594445 T C 6e-04 0.985 0.522 1.857 -0.0152 0.3236 20301 21839...

sher-l

revisit FAQ 5

1

Check if it still applies: https://rmagno.eu/gwasrapidd/articles/faq.html#5-genomic-coordinates-of-genomic-contexts-seem-to-be-wrong-

ramiromagno

Refactor parsing functions to use `purrr::pluck()`

1

Refactor all those parsing functions in files parse-*.R to use `purrr::pluck()` so that we deal with missing elements gracefully: https://adv-r.hadley.nz/subsetting.html#subsetting-oob.

ramiromagno

Note to self: ```R library(tidyverse) library(gwasrapidd) library(GenomicRanges) gwasrapidd::get_associations(variant_id = "rs1800629", efo_trait = "cancer") ``` works seemingly fine. On the other hand, ```R library(tidyverse) library(GenomicRanges) library(gwasrapidd) gwasrapidd::get_associations(variant_id = "rs1800629", efo_trait =...

ramiromagno