SISRS
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rachelss
Site Identification from Short Read Sequences.
when I run this command "sisrs sites -g 1745690 -p 40 -m 4 -f /usr/test_data -z /usr/output_data -t .99 -a minia" ,after few minutes, it's said:"raise NexusError('Dimensions must be specified...
Certain tools in the SISRS pipeline (namely BAMTools) can fail for one reason or another and don't throw an explicit error when it happens. This makes restarting SISRS after 1...
@reedacartwright and I wanted to start a conversation about possibly porting the bash portions of SISRS to Python. We both feel this would make it easier to maintain in the...
Hello all, As @anderspitman found earlier, different versions of Bowite2 give slightly different mapping data. I noticed that in the Docker version is using v.2.3.3.1, while I was using 2.3.4...
Pretty sure it's not needed since I made our own script for camparing bam files
SISRS can generate a run ID (x random numbers) and a log file. The log file could include things like program versions, mapping stats, final stats, but without the intermediate...
Future thought: Instead of subsampling reads randomly, perhaps we could be assembling better genomes and getting more representative mapping if we instead: 1) Get raw reads for X species 2)...