bunny
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rabix
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
Hi all, I have a workflow which requires downloading input files from s3 by uuid, (e.g. example.gz and example.gz.tbi are downloaded separately by its own uuid) and in later steps,...
Hello - When trying to run this command: > wget https://github.com/rabix/bunny/releases/download/v1.0.5/rabix-1.0.5.tar.gz -O rabix-1.0.5.tar.gz && tar -xvf rabix-1.0.5.tar.gz the message is "Not Found" ... This works, very small modification: > wget...
I always see these very large stack traces in the rabix composer output logs. Is there a way to fix this? About 50% of my coworkers whom use rabix composer...
In attempting to run rabix (1.0.3) on the command line on a CWL file that uses a docker container on quay.io, I got the above error message. Attached is a...
Would it be possible to provide support for ES6 in rabix executor? My understanding is that CWL 1.0 is ES5.1 and CWL 1.1 is ES6. The cwltool executor however provides...
Hi, does Rabix --cache-dir have any effect on workflow submitted to a TES? In my case I use funnel with AWS batch as the back end. I am facing the...
Hi, is there a way to retrieve the id of a submitted task to a TES? I am using rabix to submit jobs to funnel and would like to know...
@zymergen-msneddon encountered an issue where, if logged into images.sbgenomics.com with docker, public docker images could not be pulled from dockerhub. Logging out allowed these to be then be downloaded but...
Using `rabix-cli-1.0.5`, Rabix fails on CWL that specifies complex inputs, such as an array of records. By comparison, Cromwell and the reference `cwltool` both succeed on the sample inputs. An...
Your project, `rabix/bunny`, depends on the outdated library FastClasspathScanner in the following source files: * [`rabix-common/src/main/java/org/rabix/common/jvm/ClasspathScanner.java`](https://github.com/rabix/bunny/tree/master/rabix-common/src/main/java/org/rabix/common/jvm/ClasspathScanner.java) FastClasspathScanner has been significantly reworked since the version your code depends upon: * a...
