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auto-completion of edam file types

Open ghost opened this issue 6 years ago • 4 comments

in the file type field auto complete edam file types

ghost avatar Oct 18 '19 17:10 ghost

Really interested by this feature!

I don't know how hard it would be to implement, but it could be particularly interesting to make it generic so that you can perform autocompletion for any ontologies anywhere in a CWL file

For example I am using EDAM to also describe a tools functions and topics: https://github.com/MaastrichtU-IDS/d2s-cwl-workflows/blob/master/steps/run-r2rml.cwl#L62:L75

The most semantic way would be to resolve a property depending on its range in the ontology describing it, but it might be complex to properly implement so that it works for any ontology and using reasoning

vemonet avatar Mar 02 '20 06:03 vemonet

Attention @melibleq @hmenager @HagerDakroury @matuskalas

mr-c avatar Jul 31 '21 13:07 mr-c

Might go in https://github.com/rabix/benten/blob/master/benten/cwl/linkedfiletype.py ?

mr-c avatar Jul 31 '21 13:07 mr-c

Folks, any interest to pursue this?

FYI, @davelopez & @beatrizserrano are thinking about adding EDAM and/or Bio.tools suggestions to the language model for Galaxy tool wrappers

matuskalas avatar Nov 02 '23 10:11 matuskalas