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Published 20 hours ago • verified publisher icon raamana

Annotations Not Appearing for Surface Images and No Error Generated

Open atheyers opened this issue 7 years ago • 4 comments
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  • visualqc version: 0.3.3.3
  • Python version: 3.5.2
  • Operating System: Ubuntu 16.04 Guest on Windows 7

Description

Colour mapping not generated with 3D surface images but no error or warning given from tksurfer.

atheyers avatar Jun 01 '18 17:06 atheyers

Example of the image produced: image This seems to happen when some of the label files for the participant are missing or mislabelled.

atheyers avatar Feb 21 '19 14:02 atheyers

Okay, so it's definitely when either the ?h.aparc.annot files are either missing or mislabelled, but VisualQC doesn't check for this; I've tried just deleting one of the files and the one with the file still produces the colour map but the other just has the grey shell. Also found out that deleting the ?h.pial surfaces isn't caught by VisualQC; this one will give you 'Error running tksurfer to generate 3d surface visualizations - skipping them.' but it won't tell you why or stop TkSurfer trying to run. It just gives you a black box where the visualizations would be if it could run.

atheyers avatar Feb 22 '19 16:02 atheyers

thanks - so that'd be a bug, and I would fix it soon.

raamana avatar Feb 22 '19 18:02 raamana

The latter part is intended but it should never produce just a gray surface - there is a bug somewhere in the chain!

raamana avatar Feb 22 '19 19:02 raamana