Bug in runJaccard()

[kridsadakorn]

Hi,

Thank you for developing a nice package. I want to try out SnapATAC. I installed the code from Github and I tried to run the demo but it has an error. Do you have any idea why?

> data(demo.sp);
> demo.sp = makeBinary(demo.sp, mat="bmat");
> demo.sp = runJaccard(obj=demo.sp, mat="bmat", bin.downsample=1, tmp.folder=tempdir())
Error in (function (cl, name, valueClass)  : 
  'method' is not a slot in class "jaccard"

Thank you very much.

[AndresLugoCas]

I have the same problem. You were able to fix it?

[lf2684]

I also encountered this problem--I think after viewing the source code that it's because the jmat class doesn't actually have methods as a slot? I believe the developer posted that runJaccard has actually been discontinued, so I am confused as to how to normalize the data now. For reference: https://github.com/r3fang/SnapATAC/issues/125?fbclid=IwAR13ylSt-UW6dyDZVcWlvTehrdrNob6RsjOzV0ITSOQTGNYN-7002jMEyjo