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error: cell-by-peak matrix

Open Qingrun opened this issue 5 years ago • 0 comments

I have a problem with Step 12. Create a cell-by-peak matrix. I kept on getting problem like the following: ***** WARNING: File /tmp/tmplgxoCq has inconsistent naming convention for record: chr4 101347707 101347797 AAACGAAAGACACGGT-1

I searched for the previous solution like this one: https://github.com/r3fang/SnapATAC/issues/154.

I tried to install snaptools, python/2.7 into a new miniconda environment , but still didn't work. Maybe I missed installing the right dependencies. May I ask how to solve this problem?

Thanks.

Qingrun avatar Mar 30 '20 01:03 Qingrun