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Published 20 hours ago • verified publisher icon r3fang

Error running showBinSizes

Open spietrzak opened this issue 5 years ago • 0 comments

I am starting to use SnapATAC to analyze some 10X Genomics scATAC-seq data and have been following along with the tutorial. However, I have encountered the following message when I run the showBinSizes command:

showBinSizes("~/Desktop/10X Genomics/10X_Genomics_scATAC-seq/cellranger_atac_count_A2S_Day6.snap") [1] "Warning @check.bin.size: '/AM/binSizeList' not found in ~/Desktop/10X Genomics/10X_Genomics_scATAC-seq/cellranger_atac_count_A2S_Day6.snap" numeric(0)

I am not sure what this message is saying or how to resolve it, but I believe it is important for the subsequent steps. Please let me know if there is a way to correct this. Thank you.

spietrzak avatar Jan 21 '20 20:01 spietrzak