remotes
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`install_github()` fails when no write access to site library and no personal library created yet
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
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> remotes::install_github("serrat839/mRkov")
Downloading GitHub repo serrat839/mRkov@master
Skipping 1 packages not available: ISOcodes
Installing 12 packages: rtweet, tidytext, stopwords, wordcloud, hms, SnowballC, ISOcodes, progress, hunspell, generics, tokenizers, janeaustenr
Installing packages into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
Error: Failed to install 'mRkov' from GitHub:
(converted from warning) 'lib = "/usr/local/lib/R/site-library"' is not writable
> Sys.setenv(R_REMOTES_NO_ERRORS_FROM_WARNINGS=TRUE)
> remotes::install_github("serrat839/mRkov")
Downloading GitHub repo serrat839/mRkov@master
Skipping 1 packages not available: ISOcodes
Installing 12 packages: rtweet, tidytext, stopwords, wordcloud, hms, SnowballC, ISOcodes, progress, hunspell, generics, tokenizers, janeaustenr
Installing packages into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
Warning in i.p(...) :
'lib = "/usr/local/lib/R/site-library"' is not writable
Would you like to use a personal library instead? (y/n) y
...
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
The downloaded source packages are in
‘/tmp/RtmptGS1IL/downloaded_packages’
✔ checking for file ‘/tmp/RtmptGS1IL/remoteseb878f42ebd/serrat839-mRkov-d29973e/DESCRIPTION’ (574ms)
─ preparing ‘mRkov’:
✔ checking DESCRIPTION meta-information
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ looking to see if a ‘data/datalist’ file should be added
─ building ‘mRkov_0.0.0.9000.tar.gz’
Installing package into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
Warning in i.p(...) :
'lib = "/usr/local/lib/R/site-library"' is not writable
Would you like to use a personal library instead? (y/n) y
Error: ERROR: no permission to install to directory ‘/usr/local/lib/R/site-library’
There were 13 warnings (use warnings() to see them)
This seems like a duplicate of https://github.com/r-lib/remotes/issues/431
IMHO this seems like a bug in base R to me, you can reproduce the issue without remotes at all.
I was going to close and move to #431 and then I noticed that was already closed.
Base install.packages() offers to create the personal library after warning. When called from remotes it doesn't. That is because remotes sets options(warn=2) so the warning turns into an error.
Even when setting R_REMOTES_NO_ERRORS_FROM_WARNINGS=TRUE it still doesn't work (see transcript above). @cfhammill's explanation in #431 makes sense although I haven't verified it myself.
When there is no personal library created, install.packages("package") creates the personal library and installs there without problem. I did this immediately after reporting this bug. This problem only arises when using remotes and is not a base R issue.
This problem still exists, and the solution as mentioned in #431 is probably still the same, and still unimplemented.
