r-lib
install.packages("pak") fails: Error in eval(ei, envir) : Compilation failed.
I am just trying to install the package.
sessionInfo()
R version 4.5.1 (2025-06-13) Platform: x86_64-pc-linux-gnu Running under: Manjaro Linux
Matrix products: default BLAS/LAPACK: /usr/lib/libopenblas.so.0.3; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=ru_RU.UTF-8 LC_NUMERIC=C LC_TIME=ru_RU.UTF-8 LC_COLLATE=ru_RU.UTF-8 LC_MONETARY=ru_RU.UTF-8
[6] LC_MESSAGES=ru_RU.UTF-8 LC_PAPER=ru_RU.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=ru_RU.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Moscow tzcode source: system (glibc)
attached base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached): [1] compiler_4.5.1 tools_4.5.1 rstudioapi_0.17.1
installation log:
...
Compiling keyring Found libsecret via pkg-config. using C compiler: ‘gcc (GCC) 15.2.1 20250813’ make[1]: Entering directory '/tmp/RtmpF5g3AW/R.INSTALLdc90433c0f74/pak/src/library/keyring/src' gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c aes.c -o aes.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c aesce.c -o aesce.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c aesni.c -o aesni.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c base64.c -o base64.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c blake2b-compress-ref.c -o blake2b-compress-ref.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c blake2b-ref.c -o blake2b-ref.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c core_hsalsa20_ref2.c -o core_hsalsa20_ref2.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c core_salsa_ref.c -o core_salsa_ref.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c crypto_generichash.c -o crypto_generichash.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c crypto_secretbox_easy.c -o crypto_secretbox_easy.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c generichash_blake2b.c -o generichash_blake2b.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c init.c -o init.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c keyring_macos.c -o keyring_macos.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c keyring_secret_service.c -o keyring_secret_service.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c keyring_wincred.c -o keyring_wincred.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c onetimeauth_poly1305.c -o onetimeauth_poly1305.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c padlock.c -o padlock.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c platform_util.c -o platform_util.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c poly1305_donna.c -o poly1305_donna.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c raes.c -o raes.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c randombytes_sysrandom.c -o randombytes_sysrandom.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c salsa20_ref.c -o salsa20_ref.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c sha256.c -o sha256.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c sodium-utils.c -o sodium-utils.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c sodium.c -o sodium.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c stream_salsa20.c -o stream_salsa20.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c verify.c -o verify.o gcc -I"/usr/include/R/" -DNDEBUG -DMBEDTLS_AES_C -DMBEDTLS_ALLOW_PRIVATE_ACCESS -DMBEDTLS_PLATFORM_PRINTF_ALT -I. -I/usr/local/include -DHAS_LIBSECRET -I/usr/include/libsecret-1 -I/usr/include/gio-unix-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/sysprof-6 -pthread -I/usr/include/tss2 -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects -c win-path.c -o win-path.o gcc -shared -L/usr/lib64/R/lib -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-z,pack-relative-relocs -flto=auto -o keyring.so aes.o aesce.o aesni.o base64.o blake2b-compress-ref.o blake2b-ref.o core_hsalsa20_ref2.o core_salsa_ref.o crypto_generichash.o crypto_secretbox_easy.o generichash_blake2b.o init.o keyring_macos.o keyring_secret_service.o keyring_wincred.o onetimeauth_poly1305.o padlock.o platform_util.o poly1305_donna.o raes.o randombytes_sysrandom.o salsa20_ref.o sha256.o sodium-utils.o sodium.o stream_salsa20.o verify.o win-path.o -lsecret-1 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib64/R/lib -lR mbedtls/platform.h:202:14: error: function ‘mbedtls_printf’ redeclared as variable 202 | extern int (*mbedtls_printf)(const char *format, ...); | ^ raes.c:9:5: note: previously declared here 9 | int mbedtls_printf(const char *format, ...) { | ^ lto1: fatal error: errors during merging of translation units compilation terminated. lto-wrapper: fatal error: gcc returned 1 exit status compilation terminated. /usr/bin/ld: error: lto-wrapper failed collect2: error: ld returned 1 exit status make[1]: *** [/usr/share/R//make/shlib.mk:10: keyring.so] Error 1 make[1]: Leaving directory '/tmp/RtmpF5g3AW/R.INSTALLdc90433c0f74/pak/src/library/keyring/src' ERROR: compilation failed for package ‘keyring’ Error in install_one(pkg, lib = lib) : FAILED Calls: install_embedded_main -> install_all -> install_one Execution halted installing via 'install.libs.R' to /home/rstanislav/R/My_R_library/00LOCK-pak/00new/pak Error in eval(ei, envir) : Compilation failed.
- removing ‘/home/rstanislav/R/My_R_library/pak’ Warning in install.packages : installation of package ‘pak’ had non-zero exit status
This is likely caused by your configuration. Nevertheless you can install a binary package, see https://pak.r-lib.org/reference/install.html#pre-built-binaries
I had basically the same issue on the latest Fedora. Installing binaries didn't help: the install would be apparently successful, but would lead to the same error messages reported in issue #802.
Installing the development version of pak with remotes (remotes::install_github("r-lib/pak")), however, works for me, and leads to a functioning installation of pak.
