r-hub
Windows R-hub builder produces these errors, while Ubuntu and Fedora don't
Hi,
I tried my best but I cannot replicate these errors exclusively shown in the Windows R-hub builder (Windows Server 2022, R-devel, 64 bit). The other R-hub builders are without any error, warning or note (Ubuntu Linux 20.04.1 LTS, R-release, GCC, Fedora Linux, R-devel, clang, gfortran). Perhaps something in the config of the builder is broken.
Best wishes, Thomas
Snip ---
- checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building 'FCO.Rmd' using rmarkdown 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories: CRAN: https://cloud.r-project.org/
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories: CRAN: https://cloud.r-project.org/
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories: CRAN: https://cloud.r-project.org/
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories: CRAN: https://cloud.r-project.org/
Quitting from lines 145-147 (FCO.Rmd) Error: processing vignette 'FCO.Rmd' failed with diagnostics: 2 nodes produced errors; first error: there is no package called 'dplyr' --- failed re-building 'FCO.Rmd'
SUMMARY: processing the following file failed: 'FCO.Rmd'
Error: Vignette re-building failed. Execution halted --- Snip
2 nodes produced errors; first error: there is no package called 'dplyr'
Check the log and see dplyr if dplyr was installed and if not then why not.
Thx. Dplyr is suggested by simstandard, as indicated in the log. Why this builder does not install & load it, but the others do, is out of my control.
You need to read the log, or link it here. We can't help you without the log.
This issue is about the previous R-hub system, it does not apply to the new system, so I am closing it now. Please see https://r-hub.github.io/rhub/ for the new system, R-hub v2.