Alan R Lowe

Hi @akas0018 - yes, it should work, although the functionality is a little experimental. You can see more in the PR where we added the merging functionality: https://github.com/lowe-lab-ucl/arboretum/pull/94

Related issue: https://github.com/napari/napari/issues/2560

Related #23

I'm glad you're excited about this, and hope the tracker works well for your system. Thanks for the suggestions re: the plugin - these are really helpful. I'm adding most...

There is a simple working version available now. It's still a work in progress, but you can load your segmentation, localize the cells and track them directly from napari. There...

> but may require a more sophisticated layout engine I think this is the crux of it. Laying out planar directed graphs is a tricky problem, so if you have...

Hi @phisanti - absolutely! I don't have much time to support this anymore, so it'd be awesome to have some help. I made a start on this here. Also -...

I think this is finally working! https://pypi.org/project/btrack/0.7.0rc1/

Hi Fabrice, This should be pretty simple from a notebook, using the [H5 file handler](https://btrack.readthedocs.io/en/latest/api/btrack.io.HDF5FileHandler.html#btrack.io.HDF5FileHandler.write_segmentation), something like this: ```python with btrack.io.HDF5FileHandler("/path/to/file.h5", "w") as hdf: hdf.write_segmentation(cellpose_segmentation_as_numpy_arr) hdf.write_tracks(btrack_tracks) ``` Let me know...

I think the `Tracks` layer should display nD data (if you remove that check in `_validate_track_data`), it's just that there will be no slicing in the non-displayed dims. In general,...