Qiyun Zhu
Qiyun Zhu
@gregcaporaso @wasade @mortonjt I have done some research following our discussions on the SSW wrapper's dependency problem and the slow, deprecated Python code (see PR #1830 , issue #1814 ,...
Hi @wasade , Zijun and I noticed an issue when using the `find` function of `TreeNode`. We are not sure if it is the anticipated behavior or a bug. Basically,...
See: https://stackoverflow.com/questions/76266588/ https://bugzilla.mozilla.org/show_bug.cgi?id=1833496
It would be interesting and useful to extract k-mers when reading assembly sequences (FASTA), and perform some simple dimensionality reduction (such as PCA) afterwards to build a meaningful scatter plot....
The Greengenes-style taxonomic lineage file format is widely used in microbiomics, such as QIIME 2, GTDB-tk, MetaPhlAn, etc. It would be good to let the user append taxonomic annotations of...
The sliding legends are convenient for re-scaling (re-setting the visual min/max) contigs. A potential new usage is to let the user slide the legends to show only contigs in the...
With a co-assembly one wants to see differential coverage profiles of bins among samples with convenience. Currently there is a workaround: Manually select coverage profiles under "opacity". This isn't convenient...
Let the user press a key or button to hide everything but the selected contigs. This will le the user concentrate on the current bin (or a random set of...
A few more palettes will be useful. The method of adding palettes can be found in `static/js/resource.js`. The Matplotlib palettes can be found [here](https://matplotlib.org/stable/tutorials/colors/colormaps.html). I think the following palettes can...
The design of user interface didn't consider touch screens. In my tests, it works on a touch screen, but is bit cumersome, since the moving and zooming operations are not...