qiita
qiita copied to clipboard
figure out how to get taxonomies in the GG2 tables for analyses
@wasade reported that he couldn't do a taxonomy summary in Qiita. After a quick review I think the problem is that the biom table doesn't have the taxonomies as metadata.
Many people have commented on this
On Wed, Apr 17, 2024 at 6:43 AM Antonio Gonzalez @.***> wrote:
@wasade https://github.com/wasade reported that he couldn't do a taxonomy summary in Qiita. After a quick review I think the problem is that the biom table doesn't have the taxonomies as metadata.
— Reply to this email directly, view it on GitHub https://github.com/qiita-spots/qiita/issues/3392, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAPL3AHI76XVCA3PW7AKSKTY5Z37BAVCNFSM6AAAAABGLLNP56VHI2DSMVQWIX3LMV43ASLTON2WKOZSGI2DQMZTGQ4TKMA . You are receiving this because you are subscribed to this thread.Message ID: @.***>
-- Gail Ackermann Lab Co-ordinator Knight Lab UCSD 303-889-9763
@.*** @.***>
QIIME 2 doesn't use metadata within the table, would it be possible for Qiita to provide the FeatureData[Taxonomy]
artifact for the samples?