greedy

greedy copied to clipboard

Hi Paul, Was really hoping to register using my full resolution data, but there seems to be a scaling issue. ITK version: 4.13.2 Greedy commit: abef6386366cd1a7d296cd8df0d76c9b3368aaab I'm using an old...

GFleishman

Transformation On PointSets (-rs)

2

I used the following commands for registration and it worked perfectly. After that, I applied transformation (warp(affine)) on pointset like .vtk or .obj formats but there is a problem that...

faeze-el

-o cannot save any thing on disk in windows system

5

Tried affine registration but no output saved

linfanluntan

Building on Fedora

3

I'm unable to build greedy on Fedora 31. InsightToolkit-vtk-devel Version: 4.13.1 Cmake Version: 3.14.5 $ cmake ../greedy -DITK_DIR=/usr/lib64/cmake/InsightToolkit/ -- GREEDY Version: 1.0.1 Released Mar 21, 2019 -- GIT Info: --...

alcir

The [documentation](https://sites.google.com/view/greedyreg/documentation?authuser=0#h.p_heM-fKSS-jNI) says I can do > greedy -d 3 -s 1.5x1.8x2.0vox 0.2vox ... but the argument to `-s` is read as a scalar, so it fails.

cookpa

Smoothing cannot be zero

1

I would like to evaluate some parameter choices against ANTs defaults, which use zero smoothing in some contexts. Using `-s 1.732vox 0vox` (ANTs default) in registration causes a runtime error:...

cookpa

Showing black border square when conducting affine transform

1

 like above(one slice of a 3d picture) Is there anything wrong with the parameters? Here is the .bash file I use. All the .nii file are 3 dimensional picture....

AndysonYs

I think itkBarrier is deprecated for ITKv5

1

https://github.com/InsightSoftwareConsortium/ITK/blob/af3d6c52303c61eb078c2ae7a063164b8aaa1ed2/Modules/Compatibility/Deprecated/src/itkBarrier.cxx - think this breaks the greedy compilation.

muschellij2

Did you mean "almost no cost to performance" in [L#206](https://github.com/pyushkevich/greedy/blame/master/docs/reference.rst#L206) Currently it says: > "Note that there is almost to performance cost for using larger radii due to efficient implementation."

vzickus

Many Errors while building ITK-Snap

5

Hey, I want to build iITK-Snap to create some additional feature to it, but if I'm building it on my Windows 10, i get a lot of errors regarding greedy....

MarkNerdi