greedy

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What are the default parameters for registration in itk snap 3.6.0?

1

I did registration of 3d images in ITK-SNAP and it was great. Now I want to reproduce it using command line tool. What parameters should I pass to get the...

EgShes

newest VTK cannot be found

21

When compiling greedy, it asked for VTK binary directory. Following [similar issue here](https://github.com/pyushkevich/greedy/issues/33#issuecomment-1155335034), I installed VTK but now is giving this error: From the VTK [git repo](https://gitlab.kitware.com/vtk/vtk/-/tree/master) I could not...

ShuonanChen

ccmake issue when building Greedy on MacOS

3

Hi, I have tried to install greedy under MacOS. I followed the installation instruction and installed CMake 3.23.2 and ITK 5.2.1. When I tried to run ccmake for building greedy,...

amylyu1123

Non-deterministic output transformations on Linux

3

Hi, I've identified an issue with output transformations calculated by Greedy on Linux. I run it several times to register data using affine options with the command below and received...

machur

Hi Paul, Do you have any plans to offer greedy as a python package so that it can be daisy-changed into larger projects? Cheers, Sarthak

sarthakpati

Apply transformation matrices generated by greedy to images loaded in SimpleITK

1

Hello I'm having a great time using greedy. I'm wondering what's an easy way to apply the transforms generated by greedy to images loaded in SimpleITK (Python)? I understand that...

jingxuanlim

Error on using `-dof 7`

1

Trying rigid registration plus uniform scaling with the `-dof 7` option. I get the error ABORTING PROGRAM DUE TO RUNTIME EXCEPTION -- DOF parameter only accepts 6 and 12 as...

soundray

use std::isnan

2

scoping `isnan` to use the stdlib version fixes #23 Is there a better `isnan` to use :shrug:

vanossj

Errors building in docker

9

I've been trying to get greedy to build in a docker container but I'm running into errors with `isnan` ITK: 4.12.2 greedy: a9fcaac Dockerfile ```dockerfile FROM ubuntu:18.04 RUN apt-get update...

vanossj

itkv5 progress

5

Hi @pyushkevich - just wanted to give an update. I made lots of little changes to get ITK 5.1.2 compiling on [this forked branch](https://github.com/mschachter/greedy/tree/itkv5_upgrade). Now the bigger changes need to...

mschachter