pytest
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pytest-dev
Running pytest on a file importing pandas and torch.onnx leads to access violation
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[x] a detailed description of the bug or problem you are having
While running
pyteston a file containing import of bothtorch.onnxandpandas,pytestcrashes with an access violation. -
[x] output of
pip listfrom the virtual environment you are using
absl-py 2.1.0
alabaster 0.7.16
anyio 4.4.0
argon2-cffi 23.1.0
argon2-cffi-bindings 21.2.0
arrow 1.3.0
astroid 3.2.4
asttokens 2.4.1
async-lru 2.0.4
attrs 24.2.0
audioread 3.0.1
babel 2.16.0
beautifulsoup4 4.12.3
black 24.8.0
bleach 6.1.0
certifi 2024.7.4
cffi 1.17.0
cfgv 3.4.0
charset-normalizer 3.3.2
click 8.1.7
cloudpickle 3.0.0
colorama 0.4.6
coloredlogs 15.0.1
comm 0.2.2
contourpy 1.2.1
coverage 7.6.1
cycler 0.12.1
dask 2024.8.0
dask-expr 1.1.10
debugpy 1.8.5
decorator 5.1.1
defusedxml 0.7.1
dill 0.3.8
distlib 0.3.8
docutils 0.21.2
entrypoints 0.4
executing 2.0.1
fastjsonschema 2.20.0
filelock 3.15.4
flatbuffers 24.3.25
fonttools 4.53.1
fqdn 1.5.1
fsspec 2024.6.1
gitdb 4.0.11
GitPython 3.1.43
grpcio 1.65.5
h11 0.14.0
h5py 3.11.0
httpcore 1.0.5
httpx 0.27.0
humanfriendly 10.0
identify 2.6.0
idna 3.7
imagesize 1.4.1
imbalanced-learn 0.11.0
importchecker 2.0
importlib_metadata 8.3.0
iniconfig 2.0.0
interchange 2021.0.4
ipykernel 6.29.5
ipython 8.18.1
ipython-genutils 0.2.0
ipywidgets 8.1.3
isoduration 20.11.0
isort 5.13.2
jedi 0.19.1
Jinja2 3.1.4
joblib 1.4.2
json5 0.9.25
jsonpointer 3.0.0
jsonschema 4.23.0
jsonschema-specifications 2023.12.1
jupyter 1.0.0
jupyter_client 8.6.2
jupyter-console 6.6.3
jupyter_core 5.7.2
jupyter-events 0.10.0
jupyter-lsp 2.2.5
jupyter_server 2.14.2
jupyter_server_terminals 0.5.3
jupyterlab 4.2.4
jupyterlab_pygments 0.3.0
jupyterlab_server 2.27.3
jupyterlab_widgets 3.0.11
kiwisolver 1.4.5
lazy_loader 0.4
librosa 0.10.2.post1
llvmlite 0.41.1
locket 1.0.0
Markdown 3.7
MarkupSafe 2.1.5
matplotlib 3.9.2
matplotlib-inline 0.1.7
mccabe 0.7.0
mistune 3.0.2
monotonic 1.6
mpmath 1.3.0
msgpack 1.0.8
mypy 1.11.1
mypy-extensions 1.0.0
nbclassic 1.1.0
nbclient 0.10.0
nbconvert 7.16.4
nbformat 5.10.4
nest-asyncio 1.6.0
networkx 3.2.1
nodeenv 1.9.1
nodejs 0.1.1
notebook 7.2.1
notebook_shim 0.2.4
npTDMS 1.9.0
Nuitka 2.4.7
numba 0.58.1
numpy 1.26.4
onnx 1.16.2
onnxconverter-common 1.13.0
onnxmltools 1.12.0
onnxruntime 1.19.0
optional-django 0.1.0
ordered-set 4.1.0
overrides 7.7.0
packaging 24.1
pandarallel 1.6.5
pandas 2.2.2
pandocfilters 1.5.1
pansi 2020.7.3
parso 0.8.4
partd 1.4.2
pathspec 0.12.1
patsy 0.5.6
pickleshare 0.7.5
pillow 10.4.0
pip 23.3.1
platformdirs 4.2.2
pluggy 1.5.0
pooch 1.8.2
pre-commit 3.8.0
prometheus_client 0.20.0
prompt_toolkit 3.0.47
protobuf 3.20.3
psutil 5.9.8
pure_eval 0.2.3
py2neo 2021.2.4
pyarrow 14.0.2
pycparser 2.22
pydmd 1.0.0
pyflakes 2.5.0
Pygments 2.18.0
pylint 3.2.6
pyoxidizer 0.22.0
pyparsing 3.1.2
pyqtgraph 0.13.7
pyreadline3 3.4.1
PySide6 6.7.2
PySide6_Addons 6.7.2
PySide6_Essentials 6.7.2
pytest 7.4.4
pytest-cov 5.0.0
pytest-regtest 2.1.1
python-dateutil 2.9.0.post0
python-json-logger 2.0.7
pytz 2024.1
PyWavelets 1.6.0
pywin32 306
pywinpty 2.0.13
PyYAML 6.0.2
pyzmq 26.1.1
qtconsole 5.5.2
QtPy 2.4.1
referencing 0.35.1
requests 2.32.3
rfc3339-validator 0.1.4
rfc3986-validator 0.1.1
rpds-py 0.20.0
scikit-base 0.8.2
scikit-learn 1.5.1
scipy 1.13.1
seaborn 0.13.2
Send2Trash 1.8.3
setuptools 69.5.1
shap 0.46.0
shiboken6 6.7.2
six 1.16.0
skl2onnx 1.17.0
sktime 0.32.1
slicer 0.0.8
smmap 5.0.1
snakeviz 2.2.0
sniffio 1.3.1
snowballstemmer 2.2.0
soundfile 0.12.1
soupsieve 2.6
soxr 0.4.0
Sphinx 7.4.7
sphinxcontrib-applehelp 2.0.0
sphinxcontrib-devhelp 2.0.0
sphinxcontrib-htmlhelp 2.1.0
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 2.0.0
sphinxcontrib-serializinghtml 2.0.0
stack-data 0.6.3
statistics 1.0.3.5
statsmodels 0.14.2
stumpy 1.13.0
sympy 1.13.2
tensorboard 2.17.1
tensorboard-data-server 0.7.2
terminado 0.18.1
threadpoolctl 3.5.0
tikzplotlib 0.10.1
tinycss2 1.3.0
tomlkit 0.13.2
toolz 0.12.1
torch 2.4.0+cu121
torchaudio 2.4.0+cu121
torchvision 0.19.0+cu121
tornado 6.4.1
tqdm 4.66.5
traitlets 5.14.3
tsfresh 0.20.3
types-python-dateutil 2.9.0.20240316
typing_extensions 4.12.2
tzdata 2024.1
uri-template 1.3.0
urllib3 2.2.2
virtualenv 20.26.3
wcwidth 0.2.13
webcolors 24.8.0
webencodings 0.5.1
websocket-client 1.8.0
Werkzeug 3.0.3
widgetsnbextension 4.0.11
xgboost 1.7.6
zipp 3.20.0
zstandard 0.23.0
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[x] pytest and operating system versions
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pytest: Version 7.4.4
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Windows: Win 11 x64
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[x] minimal example if possible
Test code:
#
# Created on Wed Aug 21 2024
#
"""_summary_
"""
import pandas as pd
import torch.onnx
def test_demo_case() -> None:
"""_summary_"""
print("Hello from test case")
if __name__ == "__main__":
test_demo_case()
print("Hello World")
Execution with pytest demo_case.py results in
============================================================================================ test session starts ============================================================================================
platform win32 -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0
rootdir: C:\Users\user_name\Documents\Python Scripts\TARGET_project
configfile: pyproject.toml
plugins: anyio-4.4.0, cov-5.0.0, regtest-2.1.1
collecting ... Windows fatal exception: access violation
Current thread 0x00009614 (most recent call first):
File "<frozen importlib._bootstrap>", line 241 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 1233 in create_module
File "<frozen importlib._bootstrap>", line 573 in module_from_spec
File "<frozen importlib._bootstrap>", line 676 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1147 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1176 in _find_and_load
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\onnx\__init__.py", line 77 in <module>
File "<frozen importlib._bootstrap>", line 241 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 940 in exec_module
File "<frozen importlib._bootstrap>", line 690 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1147 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1176 in _find_and_load
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\torch\onnx\_internal\onnxruntime.py", line 36 in <module>
File "<frozen importlib._bootstrap>", line 241 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 940 in exec_module
File "<frozen importlib._bootstrap>", line 690 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1147 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1176 in _find_and_load
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\torch\onnx\__init__.py", line 62 in <module>
File "<frozen importlib._bootstrap>", line 241 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 940 in exec_module
File "<frozen importlib._bootstrap>", line 690 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1147 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1176 in _find_and_load
File "C:\Users\user_name\Documents\Python Scripts\\tests\demo_cases\demo_testcase_onnx.py", line 14 in <module>
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\assertion\rewrite.py", line 186 in exec_module
File "<frozen importlib._bootstrap>", line 690 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1147 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1176 in _find_and_load
File "<frozen importlib._bootstrap>", line 1204 in _gcd_import
File "C:\Program Files\Python311\Lib\importlib\__init__.py", line 126 in import_module
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\pathlib.py", line 567 in import_path
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\python.py", line 617 in _importtestmodule
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\python.py", line 528 in _getobj
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\python.py", line 310 in obj
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\python.py", line 545 in _inject_setup_module_fixture
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\python.py", line 531 in collect
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\runner.py", line 372 in <lambda>
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\runner.py", line 341 in from_call
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\runner.py", line 372 in pytest_make_collect_report
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\runner.py", line 547 in collect_one_node
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\main.py", line 842 in genitems
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\main.py", line 675 in perform_collect
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\main.py", line 335 in pytest_collection
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\main.py", line 324 in _main
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\main.py", line 271 in wrap_session
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\main.py", line 318 in pytest_cmdline_main
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\config\__init__.py", line 169 in main
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Lib\site-packages\_pytest\config\__init__.py", line 192 in console_main
File "C:\Users\user_name\AppData\Local\pypoetry\Cache\virtualenvs\target_project-MV-Np-p2-py3.11\Scripts\pytest.exe\__main__.py", line 7 in <module>
File "<frozen runpy>", line 88 in _run_code
File "<frozen runpy>", line 198 in _run_module_as_main
More details needed
Pytest running most likely causes a different memory layout and triggers the bug in the other libraries
I don't have windows available, please try different versions of panda and torch as starting point
Closing this because without any native code in pytest this is certain to be a bug in one (or several) other libraries.
