platipy
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pyplati
Processing Library and Analysis Toolkit for Medical Imaging in Python
Hi, thanks for developing a great tool. I have converted a set of nifti structures to rtss using your code. The nifti structures were generated from a CT using TotalSegmentator....
Hi @pchlap, I have ran some dosimetric analysis on clinical RTdose (with RTstruct) using your package. The code was nice and smooth. I was able to get the DVH and...
1. I want to calculate dvh directly through DICOM folders and RST DICOM files and Dose DICOM files, but what I do now is to convert these to nii.gz and...
I'm using platipy cardiac to segment a group of nifts. It works fine for most of them but throws this error for some of them. It looks like the first...
Hello. I tried conducting mask registration with two 2D dicom masks. However. I got the error message which shows that **The number of pixels along dimension 2 is less than...
This might be a bit of a weird error but I ran process_dicom_directory with a dicom structure set with ct and struct dicom files and got the following error: `...
- [x] Visualisation (already exists) - [ ] Image registration (Rob) - [x] Atlas based segmentation (Phil) - [ ] Synthetic deformation (fast example) (Rob) - [x] Contour comparison metrics...
```File ~/.local/lib/python3.9/site-packages/platipy/dicom/io/rtstruct_to_nifti.py:203, in transform_point_set_from_dicom_struct(dicom_image, dicom_struct, spacing_override) 198 filled_indices_x, filled_indices_y = polygon( 199 x_vertex_arr_image, y_vertex_arr_image, shape=slice_arr.shape 200 ) 201 slice_arr[filled_indices_y, filled_indices_x] = 1 --> 203 image_blank[z_index] += slice_arr 205 if not...
@rnfinnegan, that was a great talk on the work you and @pchlap have been doing in Platipy undergoing approximately anatomically relevant deformations. As discussed at the conference I had a...
I am working on a set of MR images with RTStructs. The protocol for generating those MR images is in such a way that the patient does not lie parallel...
