platipy

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pchlap

urllib error on clusters in run_hybrid_segmentation

2

When running `run_hybrid_segmentation `on HPC clusters, it may report the following error: `urllib.error.URLError: `. This error is likely raised because the cluster nodes cannot access the data URL. Therefore, `run_hybrid_segmentation`...

Ken32g

For those inputs with whole-body PET/CT, the head had better to be cropped before input into Platipy, otherwise ITK may report errors in the segmentation stage.

Ken32g

Hello, I met this problem when I deal with [CPTAC-PDA](https://www.cancerimagingarchive.net/collection/cptac-pda/) CT data on windows 10. On about 10% of cases, convert_rtstruct only returns the result of images. The reproduce code...

Prz00124

Code gets stuck in generate_valve_using_cylinder in valve.py

2

Hey guys. I have been generating some cardiac substructures and the code has been really helpful and easy to use. One minor issue I have found is that in the...

MarkGardnerUSyd

Pinckling Error On MacOS

6

Hello, I'm trying to use the Segmentation Cardiac Tool. After installing PyTorch and nnUnet and running the code, I get the following error. My setup MacOS BigSur 11.3.1, Python 3.9,...

VincentBourbon

Conversion of dicom structure to nii.gz doesn't retain holes in structure

1

Hi team, When using convert_rtstruct, if there's a hole in the structure in the dicom, this isn't retained. The resultant nii.gz fills in the hole in the structure. I noticed...

nickhardcastle

image registration check raises exception

3

Hey, I wanted to check the image registration functionality. - I tried Bsplines with the script below, and got `ITK ERROR: ResampleImageFilter(000001848246B530): Interpolator not set` - The data I used...

bwheelz36

The last update of Platipy produces slightly different results

16

Hey Phil, Good day! I hope you are doing great 🙃 As always, thanks so much for developing and maintaining Platipy - you know we are big fans! As part...

denbonte

updated ImageVisualiser

rnfinnegan