pipenv Failed dependency generation and locking without useful error messages

Issue description (symptoms)

The mere existence of a file named util.py breaks dependency generation and pipenv lock.

$ pipenv --clear lock --verbose
Locking [dev-packages] dependencies...
Locking [packages] dependencies...
Building requirements...
Resolving dependencies...
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
   or: setup.py --help [cmd1 cmd2 ...]
   or: setup.py --help-commands
   or: setup.py cmd --help
error: invalid command 'egg_info'
✘ Locking Failed!

$ cat src/util.py
 # this file is empty%
$ rm src/util.py
$ pipenv --clear lock
Locking [dev-packages] dependencies...
Locking [packages] dependencies...
Building requirements...
Resolving dependencies...
✔ Success!
Updated Pipfile.lock (a831fd)!
$

Expected result

Expected to complete with identical output as the second run above. Or a clear error message about what part of the process failed or how to get more information.

Actual result

As above, locking failed with message about setup.py and egg_info. No verbose output produced.

Steps to replicate

UPDATE: turns out there was an error in the src folder package (see later comments) but it was difficult to track down from the usage: setup.py ... error: invalid command 'egg_info' message.

This was a default project for AWS Amplify (fairly empty with python files under src/) as described in the Pipfile. The util.py file is not referenced anywhere. I might be able to repro it with a completely empty folder and new project without any python sources or extra files.

$ pipenv --support

Pipenv version: '2022.6.7'

Pipenv location: '/Users/wp/Library/Python/3.9/lib/python/site-packages/pipenv'

Python location: '/Library/Frameworks/Python.framework/Versions/3.9/bin/python3.9'

Python installations found:

3.9.13: /Library/Frameworks/Python.framework/Versions/3.9/bin/python3
3.9.13: /Library/Frameworks/Python.framework/Versions/3.9/bin/python3.9
3.9.13: /opt/homebrew/bin/python3
3.9.13: /opt/homebrew/bin/python3.9
3.9.13: /usr/local/bin/python3
3.9.13: /usr/local/bin/python3.9
3.8.10: /Users/wp/.pyenv/versions/3.8.10/bin/python3
3.8.10: /Users/wp/.pyenv/versions/scripting/bin/python3
3.8.9: /usr/local/bin/python3.8
3.8.9: /usr/bin/python3

PEP 508 Information:

{'implementation_name': 'cpython',
 'implementation_version': '3.9.13',
 'os_name': 'posix',
 'platform_machine': 'arm64',
 'platform_python_implementation': 'CPython',
 'platform_release': '21.5.0',
 'platform_system': 'Darwin',
 'platform_version': 'Darwin Kernel Version 21.5.0: Tue Apr 26 21:08:37 PDT '
                     '2022; root:xnu-8020.121.3~4/RELEASE_ARM64_T6000',
 'python_full_version': '3.9.13',
 'python_version': '3.9',
 'sys_platform': 'darwin'}

System environment variables:

TERM_SESSION_ID
SSH_AUTH_SOCK
LC_TERMINAL_VERSION
COLORFGBG
ITERM_PROFILE
XPC_FLAGS
LANG
PWD
SHELL
__CFBundleIdentifier
SECURITYSESSIONID
TERM_PROGRAM_VERSION
TERM_PROGRAM
PATH
LC_TERMINAL
COLORTERM
COMMAND_MODE
TERM
HOME
TMPDIR
USER
XPC_SERVICE_NAME
LOGNAME
LaunchInstanceID
__CF_USER_TEXT_ENCODING
ITERM_SESSION_ID
SHLVL
OLDPWD
HOMEBREW_PREFIX
HOMEBREW_CELLAR
HOMEBREW_REPOSITORY
MANPATH
INFOPATH
EDITOR
FB_UID
BACKUP_FOLDER
DOTFILES_FOLDER
DOTNET_CLI_TELEMETRY_OPTOUT
NASVM_SERVER
LSCOLORS
CLICOLOR
PROMPT
PROMPT_SECONDS
PROMPT_TMOUT
RPROMPT
ZEPHYR_TOOLCHAIN_VARIANT
GNUARMEMB_TOOLCHAIN_PATH
CONDA_EXE
_CE_M
_CE_CONDA
CONDA_PYTHON_EXE
CONDA_SHLVL
_
PIP_SHIMS_BASE_MODULE
PIP_DISABLE_PIP_VERSION_CHECK
PIP_PYTHON_PATH
PYTHONDONTWRITEBYTECODE
PYTHONFINDER_IGNORE_UNSUPPORTED

Pipenv–specific environment variables:

Debug–specific environment variables:

PATH: /opt/homebrew/Caskroom/miniforge/base/condabin:/Users/wp/bin:/usr/local/opt/[email protected]/bin:/usr/local/lib/ruby/gems/2.7.0/bin:/Library/Frameworks/Python.framework/Versions/3.9/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/share/dotnet:~/.dotnet/tools:/Library/Apple/usr/bin:/Library/Frameworks/Mono.framework/Versions/Current/Commands:/Applications/Wireshark.app/Contents/MacOS:/Users/wp/Library/Python/3.9/bin:/Applications/Visual Studio Code.app/Contents/Resources/app/bin:/Users/wp/work/sdk/connectiq-sdk-mac-3.1.6-2019-10-23-2de4665c6/bin
SHELL: /bin/zsh
EDITOR: vim
LANG: en_US.UTF-8
PWD: /Users/wp/work/test-site/amplify/backend/function/DialogueFunction

Contents of Pipfile ('/Users/wp/work/test-site/amplify/backend/function/DialogueFunction/Pipfile'):

[[source]]
name = "pypi"
url = "https://pypi.org/simple"
verify_ssl = true

[packages]
src = {editable = true, path = "./src"}
boto3 = "*"
openai = "*"

[dev-packages]

[requires]
python_version = "3.9"

Contents of Pipfile.lock ('/Users/wp/work/test-site/amplify/backend/function/DialogueFunction/Pipfile.lock'):

{
    "_meta": {
        "hash": {
            "sha256": "8d415cc61551020b95e6dddfd184aa8bd22cf42dc71b5ce9190b9ad93ca831fd"
        },
        "pipfile-spec": 6,
        "requires": {
            "python_version": "3.9"
        },
        "sources": [
            {
                "name": "pypi",
                "url": "https://pypi.org/simple",
                "verify_ssl": true
            }
        ]
    },
    "default": {
        "boto3": {
            "hashes": [
                "sha256:882091279f4520bf6b8b535e02dbef4fe14280404035a93ea5396821f10b4f4b",
                "sha256:cc01e513a54914b2a8b5515cade3bc359f9001b108416664053f02882f85050f"
            ],
            "index": "pypi",
            "version": "==1.24.19"
        },
        "botocore": {
            "hashes": [
                "sha256:850bec9363e10c56b2678c3742a48150f6201d7184695326a380fe7341075484",
                "sha256:e52c77fb349ae5d2a36ba0c2d1dc1416d963f987139dc2e036d2d8d697e4b4c7"
            ],
            "markers": "python_version >= '3.7'",
            "version": "==1.27.19"
        },
        "certifi": {
            "hashes": [
                "sha256:84c85a9078b11105f04f3036a9482ae10e4621616db313fe045dd24743a0820d",
                "sha256:fe86415d55e84719d75f8b69414f6438ac3547d2078ab91b67e779ef69378412"
            ],
            "markers": "python_version >= '3.6'",
            "version": "==2022.6.15"
        },
        "charset-normalizer": {
            "hashes": [
                "sha256:5189b6f22b01957427f35b6a08d9a0bc45b46d3788ef5a92e978433c7a35f8a5",
                "sha256:575e708016ff3a5e3681541cb9d79312c416835686d054a23accb873b254f413"
            ],
            "markers": "python_version >= '3.6'",
            "version": "==2.1.0"
        },
        "cycler": {
            "hashes": [
                "sha256:3a27e95f763a428a739d2add979fa7494c912a32c17c4c38c4d5f082cad165a3",
                "sha256:9c87405839a19696e837b3b818fed3f5f69f16f1eec1a1ad77e043dcea9c772f"
            ],
            "markers": "python_version >= '3.6'",
            "version": "==0.11.0"
        },
        "et-xmlfile": {
            "hashes": [
                "sha256:8eb9e2bc2f8c97e37a2dc85a09ecdcdec9d8a396530a6d5a33b30b9a92da0c5c",
                "sha256:a2ba85d1d6a74ef63837eed693bcb89c3f752169b0e3e7ae5b16ca5e1b3deada"
            ],
            "markers": "python_version >= '3.6'",
            "version": "==1.1.0"
        },
        "fonttools": {
            "hashes": [
                "sha256:c0fdcfa8ceebd7c1b2021240bd46ef77aa8e7408cf10434be55df52384865f8e",
                "sha256:f829c579a8678fa939a1d9e9894d01941db869de44390adb49ce67055a06cc2a"
            ],
            "markers": "python_version >= '3.7'",
            "version": "==4.33.3"
        },
        "idna": {
            "hashes": [
                "sha256:84d9dd047ffa80596e0f246e2eab0b391788b0503584e8945f2368256d2735ff",
                "sha256:9d643ff0a55b762d5cdb124b8eaa99c66322e2157b69160bc32796e824360e6d"
            ],
            "markers": "python_version >= '3.5'",
            "version": "==3.3"
        },
        "jmespath": {
            "hashes": [
                "sha256:02e2e4cc71b5bcab88332eebf907519190dd9e6e82107fa7f83b1003a6252980",
                "sha256:90261b206d6defd58fdd5e85f478bf633a2901798906be2ad389150c5c60edbe"
            ],
            "markers": "python_version >= '3.7'",
            "version": "==1.0.1"
        },
        "kiwisolver": {
            "hashes": [
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                "sha256:1d2c744aeedce22c122bb42d176b4aa6d063202a05a4abdacb3e413c214b3694",
                "sha256:21a3a98f0a21fc602663ca9bce2b12a4114891bdeba2dea1e9ad84db59892fca",
                "sha256:22ccba48abae827a0f952a78a7b1a7ff01866131e5bbe1f826ce9bda406bf051",
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                "sha256:325fa1b15098e44fe4590a6c5c09a212ca10c6ebb5d96f7447d675f6c8340e4e",
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            "version": "==1.23.0"
        },
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Jun 29 '22 18:06 MrBrunoSilva

Looks like this is a problem with setuptools that only happens depending on certain files (a file named test.py doesn't trigger it). The output of pipdev install -e src is less baffling:

  × Getting requirements to build wheel did not run successfully.
  │ exit code: 1
  ╰─> [14 lines of output]
      error: Multiple top-level modules discovered in a flat-layout: ['index', 'util'].

      To avoid accidental inclusion of unwanted files or directories,
      setuptools will not proceed with this build.

      If you are trying to create a single distribution with multiple modules
      on purpose, you should not rely on automatic discovery.
      Instead, consider the following options:

      1. set up custom discovery (`find` directive with `include` or `exclude`)
      2. use a `src-layout`
      3. explicitly set `py_modules` or `packages` with a list of names

      To find more information, look for "package discovery" on setuptools docs.
      [end of output]

Jun 29 '22 20:06 MrBrunoSilva

@MrBrunoSilva Ah yes because you have src listed as an editable install in your Pipfile it needs to have valid python setup configuration (there are multiple ways to achieve this).

Jun 29 '22 20:06 matteius

I'll leave this open so you can decide whether you should surface a meaningful error message when there is a package problem. Thanks

Jun 29 '22 21:06 MrBrunoSilva

I mean the actual error is being surfaced, which is a setuptools distutils error trying to generate the metdata in requirementslib:

usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
   or: setup.py --help [cmd1 cmd2 ...]
   or: setup.py --help-commands
   or: setup.py cmd --help
error: invalid command 'egg_info'

It just isn't obvious that its because the specified editable install has no setup info available. I am not sure that surfacing a different error is going to be that practical/feasible from the perspective of pipenv. Maybe it would be better as a requirementslib ask (not entirely sure yet), but to be honest its pretty low priority for me given other relevant backlog items. that are actual bugs

Jun 30 '22 02:06 matteius

Even pointing in the direction of the internal package and suggesting pipdev install -e <pkg> would be helpful. I ran into this as well with AWS amplify and searches related to the error all (understandably) point to issues with setuptools.

Nov 26 '22 14:11 gdbassett

Looks like this is a problem with setuptools that only happens depending on certain files (a file named test.py doesn't trigger it). The output of pipdev install -e src is less baffling:

  × Getting requirements to build wheel did not run successfully.
  │ exit code: 1
  ╰─> [14 lines of output]
      error: Multiple top-level modules discovered in a flat-layout: ['index', 'util'].

      To avoid accidental inclusion of unwanted files or directories,
      setuptools will not proceed with this build.

      If you are trying to create a single distribution with multiple modules
      on purpose, you should not rely on automatic discovery.
      Instead, consider the following options:

      1. set up custom discovery (`find` directive with `include` or `exclude`)
      2. use a `src-layout`
      3. explicitly set `py_modules` or `packages` with a list of names

      To find more information, look for "package discovery" on setuptools docs.
      [end of output]

This was very helpful

Feb 27 '23 06:02 rjbks