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Published 20 hours ago • verified publisher icon pyiron

Update pack and unpack methods

Open srmnitc opened this issue 2 years ago • 15 comments

Update of the pack and unpack methods. https://github.com/pyiron/pyiron_base/issues/775

  • [x] pack includes the csv file inside the archive
  • [x] pack filename is optional, uses ".tar.gz"
  • [x] pack with same name as project should not delete the project
  • [ ] pack selected jobs by id
  • [x] pack all files in a job
  • [x] pack from a different directory than where project is located
  • [x] unpack method can be called as pr = Project(filename.tar.gz, unpack=True) or pr = Project(filename, unpack=True)
  • [x] unpack should not nest project automatically
  • [ ] unpack jobs into existing Project
  • [ ] Update tests
  • [ ] Update docstrings
  • [ ] Update workflow template

srmnitc avatar Nov 07 '22 07:11 srmnitc

@samwaseda here is the development on pack and unpack

srmnitc avatar Nov 07 '22 07:11 srmnitc

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] avatar Nov 23 '22 03:11 stale[bot]

@srmnitc Can you merge with the new main branch?

jan-janssen avatar Dec 05 '22 17:12 jan-janssen 

======================================================================
[266](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:267)
ERROR: test_content (archiving.test_export.TestPack)
[267](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:268)
----------------------------------------------------------------------
[268](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:269)
Traceback (most recent call last):
[269](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:270)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_export.py", line 64, in test_content
[270](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:271)
    self.assertEqual(len(compare_obj.diff_files), 0)
[271](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:272)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.9/filecmp.py", line 249, in __getattr__
[272](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:273)
    self.methodmap[attr](self)
[273](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:274)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.9/filecmp.py", line 185, in phase3
[274](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:275)
    xx = cmpfiles(self.left, self.right, self.common_files)
[275](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:276)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.9/filecmp.py", line 249, in __getattr__
[276](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:277)
    self.methodmap[attr](self)
[277](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:278)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.9/filecmp.py", line 154, in phase2
[278](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:279)
    for x in self.common:
[279](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:280)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.9/filecmp.py", line 249, in __getattr__
[280](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:281)
    self.methodmap[attr](self)
[281](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:282)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.9/filecmp.py", line 143, in phase1
[282](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:283)
    a = dict(zip(map(os.path.normcase, self.left_list), self.left_list))
[283](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:284)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.9/filecmp.py", line 249, in __getattr__
[284](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:285)
    self.methodmap[attr](self)
[285](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:286)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.9/filecmp.py", line 135, in phase0
[286](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:287)
    self.left_list = _filter(os.listdir(self.left),
[287](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:288)
FileNotFoundError: [Errno 2] No such file or directory: 'archive_folder/test'
[288](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:289)

[289](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:290)
======================================================================
[290](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:291)
ERROR: test_exportedCSV (archiving.test_export.TestPack)
[291](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:292)
----------------------------------------------------------------------
[292](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:293)
Traceback (most recent call last):
[293](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:294)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_export.py", line 33, in test_exportedCSV
[294](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:295)
    self.pr.pack(destination_path=self.arch_dir, compress=False)
[295](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:296)
  File "/home/runner/work/pyiron_base/pyiron_base/pyiron_base/project/generic.py", line 1628, in pack
[296](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:297)
    export_archive.copy_files_to_archive(
[297](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:298)
  File "/home/runner/work/pyiron_base/pyiron_base/pyiron_base/project/archiving/export_archive.py", line 76, in copy_files_to_archive
[298](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:299)
    raise ValueError("Folder exists, give different name or allow compression")
[299](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:300)
ValueError: Folder exists, give different name or allow compression
[300](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:301)

[301](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:302)
======================================================================
[302](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:303)
ERROR: test_check_job_parameters (archiving.test_import.TestUnpacking)
[303](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:304)
Imported jobs should be equal to their originals in all their parameters.
[304](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:305)
----------------------------------------------------------------------
[305](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:306)
Traceback (most recent call last):
[306](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:307)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[307](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:308)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[308](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:309)
AttributeError: 'Project' object has no attribute 'unpack'
[309](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:310)

[310](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:311)
======================================================================
[311](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:312)
ERROR: test_docstrings (archiving.test_import.TestUnpacking)
[312](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:313)
Fails with output if docstrings in the given module fails.
[313](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:314)
----------------------------------------------------------------------
[314](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:315)
Traceback (most recent call last):
[315](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:316)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[316](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:317)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[317](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:318)
AttributeError: 'Project' object has no attribute 'unpack'
[318](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:319)

[319](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:320)
======================================================================
[320](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:321)
ERROR: test_import_compressed (archiving.test_import.TestUnpacking)
[321](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:322)
----------------------------------------------------------------------
[322](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:323)
Traceback (most recent call last):
[323](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:324)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[324](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:325)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[325](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:326)
AttributeError: 'Project' object has no attribute 'unpack'
[326](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:327)

[327](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:328)
======================================================================
[328](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:329)
ERROR: test_import_csv (archiving.test_import.TestUnpacking)
[329](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:330)
----------------------------------------------------------------------
[330](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:331)
Traceback (most recent call last):
[331](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:332)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[332](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:333)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[333](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:334)
AttributeError: 'Project' object has no attribute 'unpack'
[334](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:335)

[335](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:336)
======================================================================
[336](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:337)
ERROR: test_import_from_proj (archiving.test_import.TestUnpacking)
[337](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:338)
----------------------------------------------------------------------
[338](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:339)
Traceback (most recent call last):
[339](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:340)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[340](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:341)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[341](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:342)
AttributeError: 'Project' object has no attribute 'unpack'
[342](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:343)

[343](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:344)
======================================================================
[344](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:345)
ERROR: test_import_uncompress (archiving.test_import.TestUnpacking)
[345](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:346)
----------------------------------------------------------------------
[346](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:347)
Traceback (most recent call last):
[347](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:348)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[348](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:349)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[349](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:350)
AttributeError: 'Project' object has no attribute 'unpack'
[350](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:351)

[351](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:352)
======================================================================
[352](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:353)
ERROR: test_import_with_targz_extension (archiving.test_import.TestUnpacking)
[353](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:354)
----------------------------------------------------------------------
[354](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:355)
Traceback (most recent call last):
[355](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:356)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[356](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:357)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[357](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:358)
AttributeError: 'Project' object has no attribute 'unpack'
[358](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:359)

[359](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:360)
======================================================================
[360](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:361)
ERROR: test_load_job (archiving.test_import.TestUnpacking)
[361](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:362)
Jobs should be able to load from the imported project.
[362](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:363)
----------------------------------------------------------------------
[363](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:364)
Traceback (most recent call last):
[364](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:365)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[365](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:366)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[366](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:367)
AttributeError: 'Project' object has no attribute 'unpack'
[367](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:368)

[368](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:369)
======================================================================
[369](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:370)
ERROR: test_unpack_from_other_dir_uncompress (archiving.test_import.TestUnpacking)
[370](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:371)
----------------------------------------------------------------------
[371](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:372)
Traceback (most recent call last):
[372](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:373)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[373](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:374)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[374](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:375)
AttributeError: 'Project' object has no attribute 'unpack'
[375](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:376)

[376](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:377)
======================================================================
[377](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:378)
ERROR: test_unpack_to_nested_project (archiving.test_import.TestUnpacking)
[378](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:379)
----------------------------------------------------------------------
[379](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:380)
Traceback (most recent call last):
[380](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:381)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_import.py", line 30, in setUp
[381](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:382)
    self.imp_pr.unpack(origin_path=self.arch_dir_comp, compress=True)
[382](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:383)
AttributeError: 'Project' object has no attribute 'unpack'
[383](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:384)

[384](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:385)
======================================================================
[385](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:386)
FAIL: test_HDF5 (archiving.test_export.TestPack)
[386](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:387)
----------------------------------------------------------------------
[387](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:388)
Traceback (most recent call last):
[388](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:389)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_export.py", line 50, in test_HDF5
[389](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:390)
    self.assertTrue(os.path.exists(h5_file_path))
[390](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:391)
AssertionError: False is not true
[391](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:392)

[392](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:393)
======================================================================
[393](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:394)
FAIL: test_compress (archiving.test_export.TestPack)
[394](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:395)
----------------------------------------------------------------------
[395](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:396)
Traceback (most recent call last):
[396](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:397)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_export.py", line 57, in test_compress
[397](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:398)
    self.assertTrue(os.path.exists(file_path))
[398](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:399)
AssertionError: False is not true
[399](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:400)

[400](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:401)
======================================================================
[401](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:402)
FAIL: test_export_with_targz_extension (archiving.test_export.TestPack)
[402](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:403)
----------------------------------------------------------------------
[403](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:404)
Traceback (most recent call last):
[404](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:405)
  File "/home/runner/work/pyiron_base/pyiron_base/tests/archiving/test_export.py", line 80, in test_export_with_targz_extension
[405](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:406)
    self.assertListEqual(desirable_lst, content_tmp)
[406](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:407)
AssertionError: Lists differ: ['archive_folder_comp.tar.gz', 'exported.csv'] != ['test.tar.gz']
[407](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:408)

[408](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:409)
First differing element 0:
[409](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:410)
'archive_folder_comp.tar.gz'
[410](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:411)
'test.tar.gz'
[411](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:412)

[412](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:413)
First list contains 1 additional elements.
[413](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:414)
First extra element 1:
[414](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:415)
'exported.csv'
[415](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:416)

[416](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:417)
- ['archive_folder_comp.tar.gz', 'exported.csv']
[417](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:418)
+ ['test.tar.gz']
[418](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:419)

[419](https://github.com/pyiron/pyiron_base/actions/runs/3732373926/jobs/6331732206#step:9:420)
----------------------------------------------------------------------

jan-janssen avatar Dec 19 '22 14:12 jan-janssen

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] avatar Jan 07 '23 16:01 stale[bot]

This might be an edge case -but when I called pr.pack('.') it deleted all my calculations and everything in my sub-directory. My intuition for passing '.' was that it would just pack the project into the project name in the current directory.

mgt16-LANL avatar Feb 24 '23 16:02 mgt16-LANL

This might be an edge case -but when I called pr.pack('.') it deleted all my calculations and everything in my sub-directory. My intuition for passing '.' was that it would just pack the project into the project name in the current directory.

Your intuition was right and this function is currently not doing the right thing. It should work after this PR is merged.

samwaseda avatar Feb 24 '23 16:02 samwaseda

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] avatar Mar 18 '23 09:03 stale[bot]

Do we actually have updates on this PR? I think it would be helpful to have the functionality for Hackathon

samwaseda avatar Oct 18 '23 07:10 samwaseda

Do we actually have updates on this PR? I think it would be helpful to have the functionality for Hackathon

Not really, I most likely will not have time to finish this in the next days due to the NFDI meeting. But feel free to work on it if you find time.

srmnitc avatar Oct 18 '23 09:10 srmnitc

This might be an edge case -but when I called pr.pack('.') it deleted all my calculations and everything in my sub-directory. My intuition for passing '.' was that it would just pack the project into the project name in the current directory.

This itself has a fix now I believe https://github.com/pyiron/pyiron_base/pull/1047

srmnitc avatar Oct 18 '23 09:10 srmnitc

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] avatar Mar 17 '24 12:03 stale[bot]

@srmnitc Do you plan to continue working on this? @jyang2009 is currently working on publishing her data for one project and we were wondering what the status of publishing the data is at the moment.

jan-janssen avatar Mar 26 '24 14:03 jan-janssen

I can pick this up again and finish it. Would be the week after Easter break.

srmnitc avatar Mar 28 '24 10:03 srmnitc

Hi Sarath @srmnitc ,

I've found a bug in the pack function. Please see the issue here: https://github.com/pyiron/pyiron_base/issues/1402

Best, Jing

jyang2009 avatar Mar 28 '24 15:03 jyang2009

I merge this one to a normal branch (pack_unpack) because I take over the whole work and it appears too complicated for me to figure out how to work on forked branch

samwaseda avatar May 23 '24 08:05 samwaseda