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Remove to_hdf() and from_hdf() from LAMMPS input class

Open jan-janssen opened this issue 1 year ago • 1 comments

jan-janssen avatar Aug 24 '24 07:08 jan-janssen

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ERROR: test_lammps_water (lammps.test_base.TestLammps)
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Traceback (most recent call last):
  File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/tests/lammps/test_base.py", line 190, in test_lammps_water
    self.job.run()
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/pyiron_snippets/deprecate.py", line 158, in decorated
    return function(*args, **kwargs)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/pyiron_base/jobs/job/generic.py", line 888, in run
    self._run_if_collect()
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/pyiron_base/jobs/job/generic.py", line 1459, in _run_if_collect
    run_job_with_status_collect(job=self)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/pyiron_base/jobs/job/runfunction.py", line 339, in run_job_with_status_collect
    job.save_output(output_dict=parsed_output)
  File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/base.py", line 425, in save_output
    self.input.from_hdf(self._hdf5)
AttributeError: 'Input' object has no attribute 'from_hdf'

jan-janssen avatar Aug 24 '24 13:08 jan-janssen

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] avatar Apr 26 '25 03:04 stale[bot]