pygridtools
Hi, I got a problem about slurm_submit_batch_job error: Access/permission
Version
os: ubuntu22.04 aarch64
slurm: 23.11
slurm-drmaa:1.1.4
drmaa-python:0.7.9
python:2.7.18
I #2ce6c3 [ 0.00] * logging started at: 2024-04-12 01:14:17.37 Z
t #2ce6c3 [ 0.00] -> fsd_exc_init
t #2ce6c3 [ 0.00] <- fsd_exc_init
t #2ce6c3 [ 0.00] -> drmaa_init(contact=(null))
t #2ce6c3 [ 0.00] -> fsd_drmaa_session_new((null))
t #2ce6c3 [ 0.00] -> fsd_job_set_new()
t #2ce6c3 [ 0.00] <- fsd_job_set_new =0xaaab1d388320
t #2ce6c3 [ 0.00] -> fsd_conf_read(filename=/vol/home/hql/slurm_drmaa_path/etc/slurm_drmaa.conf, must_exist=false, content=(null))
t #2ce6c3 [ 0.00] * content from file
t #2ce6c3 [ 0.00] <- fsd_conf_read
t #2ce6c3 [ 0.00] -> fsd_conf_read(filename=/vol/home/hql/.slurm_drmaa.conf, must_exist=false, content=(null))
t #2ce6c3 [ 0.02] * content from file
t #2ce6c3 [ 0.02] <- fsd_conf_read
t #2ce6c3 [ 0.02] -> fsd_conf_read(filename=/vol/home/hql/slurm_drmaa_path/etc/slurm_drmaa.conf, must_exist=true, content=(null))
t #2ce6c3 [ 0.02] * content from file
t #2ce6c3 [ 0.02] <- fsd_conf_read
t #2ce6c3 [ 0.02] -> fsd_drmaa_session_apply_configuration
t #2ce6c3 [ 0.02] <- fsd_drmaa_session_apply_configuration
t #2ce6c3 [ 0.02] <- drmaa_init =0
t #2ce6c3 [ 4.15] -> drmaa_allocate_job_template
t #2ce6c3 [ 4.15] <- drmaa_allocate_job_template =0: jt=0xaaab1d953880
t #2ce6c3 [ 24.05] -> drmaa_set_attribute(jt=0xaaab1d953880, name='drmaa_wd', value='$drmaa_hd_ph$')
t #2ce6c3 [ 24.05] -> fsd_template_set_attr(drmaa_wd=$drmaa_hd_ph$)
t #2ce6c3 [ 24.05] <- drmaa_set_attribute =0
t #2ce6c3 [ 30.55] -> drmaa_set_attribute(jt=0xaaab1d953880, name='drmaa_remote_command', value='/vol/home/hql/Pycharm_project/drmaa-0.7.9/examples/test_hostname.sh')
t #2ce6c3 [ 30.55] -> fsd_template_set_attr(drmaa_remote_command=/vol/home/hql/Pycharm_project/drmaa-0.7.9/examples/test_hostname.sh)
t #2ce6c3 [ 30.55] <- drmaa_set_attribute =0
t #2ce6c3 [ 32.57] -> drmaa_set_vector_attribute(jt=0xaaab1d953880, name='drmaa_v_argv', value=...)
t #2ce6c3 [ 32.57] <- drmaa_set_vector_attribute =0
t #2ce6c3 [ 36.14] -> drmaa_set_attribute(jt=0xaaab1d953880, name='drmaa_join_files', value='y')
t #2ce6c3 [ 36.14] -> fsd_template_set_attr(drmaa_join_files=y)
t #2ce6c3 [ 36.14] <- drmaa_set_attribute =0
t #2ce6c3 [ 39.21] -> drmaa_set_attribute(jt=0xaaab1d953880, name='drmaa_output_path', value=':$drmaa_hd_ph$/DRMAA_JOB_OUT.$drmaa_incr_ph$')
t #2ce6c3 [ 39.21] -> fsd_template_set_attr(drmaa_output_path=:$drmaa_hd_ph$/DRMAA_JOB_OUT.$drmaa_incr_ph$)
t #2ce6c3 [ 39.21] <- drmaa_set_attribute =0
t #2ce6c3 [ 51.32] -> drmaa_run_bulk_jobs(jt=0xaaab1d953880, start=1, end=3, incr=1)
d #2ce6c3 [ 51.32] * # Script:
d #2ce6c3 [ 51.32] | #!/bin/bash
d #2ce6c3 [ 51.32] | /vol/home/hql/Pycharm_project/drmaa-0.7.9/examples/test_hostname.sh '419_64k' '4'
d #2ce6c3 [ 51.32] * environ env_size = 95
d #2ce6c3 [ 51.32] * # added to job environ: SLURM_PRIO_PROCESS=0
d #2ce6c3 [ 51.32] * # added to job environ: SLURM_SUBMIT_DIR=/vol/home/hql/Pycharm_project/drmaa-0.7.9
d #2ce6c3 [ 51.32] * # added to job environ: SLURM_SUBMIT_HOST=ln2
d #2ce6c3 [ 51.32] * # added to job environ: SLURM_UMASK=0002
d #2ce6c3 [ 51.32] * # work_dir = /vol/home/hql
d #2ce6c3 [ 51.32] | drmaa_output_path: :$drmaa_hd_ph$/DRMAA_JOB_OUT.$drmaa_incr_ph$ -> /vol/home/hql/DRMAA_JOB_OUT.%a
d #2ce6c3 [ 51.32] * # output = /vol/home/hql/DRMAA_JOB_OUT.%a
d #2ce6c3 [ 51.32] * # error = /vol/home/hql/DRMAA_JOB_OUT.%a
d #2ce6c3 [ 51.32] * # Setting defaults for tasks and processors
E #2ce6c3 [ 51.32] * fsd_exc_new(1016,slurm_submit_batch_job error: Access/permission denied,1)
t #2ce6c3 [ 51.32] -> slurmdrmaa_free_job_desc
t #2ce6c3 [ 51.32] <- slurmdrmaa_free_job_desc
t #2ce6c3 [ 51.32] <- drmaa_run_bulk_jobs=17: slurm_submit_batch_job error: Access/permission denied
Traceback (most recent call last):
File "/vol/home/hql/pycharm-2024.1/plugins/python/helpers/pydev/pydevd.py", line 1535, in _exec
pydev_imports.execfile(file, globals, locals) # execute the script
File "/vol/home/hql/Pycharm_project/drmaa-0.7.9/examples/example.py", line 73, in
