An error occurred while installing from the source on aarch64.

[nutmeeeg]

😵 Describe the installation problem

An error occurred while installing from the source on aarch64. Actually, I want to install torch-geometric on aarch64. I executed the following command.

pip install ninja wheel
pip install git+https://github.com/pyg-team/pyg-lib.git

However, the following error occurred.

  Running command git clone --filter=blob:none --quiet https://github.com/pyg-team/pyg-lib.git /tmp/pip-req-build-i0glx2l_
  Running command git submodule update --init --recursive -q
  error: subprocess-exited-with-error
  
  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─
      creating build/lib.linux-aarch64-cpython-38/pyg_lib/ops
      copying pyg_lib/ops/scatter_reduce.py -> build/lib.linux-aarch64-cpython-38/pyg_lib/ops
      copying pyg_lib/ops/__init__.py -> build/lib.linux-aarch64-cpython-38/pyg_lib/ops
      running build_ext
      -- The C compiler identification is unknown
      -- The CXX compiler identification is unknown
      -- Check for working C compiler: /usr/bin/cc
      -- Check for working C compiler: /usr/bin/cc -- broken
      CMake Error at /usr/share/cmake/Modules/CMakeTestCCompiler.cmake:60 (message):
        The C compiler
      
          "/usr/bin/cc"
      
        is not able to compile a simple test program.
      
        It fails with the following output:
      
          Change Dir: /tmp/pip-req-build-i0glx2l_/build/temp.linux-aarch64-cpython-38/CMakeFiles/CMakeTmp
      
          Run Build Command(s):/xxx/anaconda3/envs/env_name/bin/ninja cmTC_3cc80 && [1/2] Building C object CMakeFiles/cmTC_3cc80.dir/testCCompiler.c.o
          FAILED: CMakeFiles/cmTC_3cc80.dir/testCCompiler.c.o
          /usr/bin/cc    -o CMakeFiles/cmTC_3cc80.dir/testCCompiler.c.o   -c testCCompiler.c
          cc1: error: /xxxxx/anaconda3/bin: Permission denied
          cc1: error: /xxxxx/anaconda3/bin: Permission denied
          cc1: error: /xxxxx/anaconda3/bin: Permission denied
          cc1: error: /xxxxx/anaconda3/bin: Permission denied
          cc1: error: /xxxxx/anaconda3/bin: Permission denied
          cc1: error: /root/bin: Permission denied
          ninja: build stopped: subcommand failed.
      
      
      
      

        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
          self.run_command(cmd)
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/dist.py", line 1234, in run_command
          super().run_command(command)
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/wheel/bdist_wheel.py", line 364, in run
          self.run_command("build")
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
          self.distribution.run_command(command)
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/dist.py", line 1234, in run_command
          super().run_command(command)
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/command/build.py", line 131, in run
          self.run_command(cmd_name)
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 318,
 in run_command
          self.distribution.run_command(command)
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/dist.py", line 1234, in run_c
ommand
          super().run_command(command)
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988
, in run_command
          cmd_obj.run()
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/command/build_ext.py", line 8
4, in run
          _build_ext.run(self)
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.
py", line 345, in run
          self.build_extensions()
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.
py", line 467, in build_extensions
          self._build_extensions_serial()
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.
py", line 493, in _build_extensions_serial
          self.build_extension(ext)
        File "/tmp/pip-req-build-i0glx2l_/setup.py", line 82, in build_extension
          subprocess.check_call(['cmake', ext.sourcedir] + cmake_args,
        File "/xxx/anaconda3/envs/env_name/lib/python3.8/subprocess.py", line 364, in check_call
          raise CalledProcessError(retcode, cmd)
      subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-req-build-i0glx2l_', '-DBUILD_TEST=OFF', '-DBUILD_BENCHMARK=OFF', '-DUSE_PYTHON=ON', '-
DWITH_CUDA=OFF', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/tmp/pip-req-build-i0glx2l_/build/lib.linux-aarch64-cpython-38', '-DCMAKE_BUILD_TYPE=RELEASE', '-DCMAK
E_PREFIX_PATH=/xxx/anaconda3/envs/env_name/lib/python3.8/site-packages/torch/share/cmake', '-GNinja']' returned
 non-zero exit status 1.
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for pyg-lib
ERROR: Could not build wheels for pyg-lib, which is required to install pyproject.toml-based projects

I don't know what problems I have encountered and what good solutions are there. Or how to install torch-geometric on aarch64? The document only mentions that it can be installed from the source. At present, I am just an ordinary user of the server, and I don't have root permission.

Environment

• pyg-lib version:
• PyTorch version: 1.11.0+cu113
• OS: Linux dlhpcshare-ccs-cli-1 4.19.90-24.4.v2101.ky10.aarch64
• Python version: 3.8.18
• CUDA/cuDNN version: 11.3 （Build cuda_11.3.r11.3/compiler.29745058_0）
• How you installed PyTorch and pyg-lib (conda, pip, source): source
• Any other relevant information: aarch64

[rusty1s]

Hm, I am not totally sure. Have you tried googling for

-- Check for working C compiler: /usr/bin/cc -- broken
      CMake Error at /usr/share/cmake/Modules/CMakeTestCCompiler.cmake:60 (message):
        The C compiler
      
          "/usr/bin/cc"
      
        is not able to compile a simple test program.

This definitely seems to be an issue with permissions.