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Published 20 hours ago • verified publisher icon pyg-team

cant seem to install on my m1 pro mac

Open Mars-Mah3r opened this issue 1 year ago • 15 comments

😵 cant install pyg

Everytime i use the command: pip install pyg-lib -f https://data.pyg.org/whl/torch-1.13.1+cpu.html I get the error message ERROR: Could not find a version that satisfies the requirement pyg-lib (from versions: none) ERROR: No matching distribution found for pyg-lib

Environment

  • pyg-lib version: n/a
  • PyTorch version: 1.13.1
  • OS: Mac OS Version 13.2.1
  • Python version: 3.10.5
  • CUDA/cuDNN version: n/a
  • How you installed PyTorch and pyg-lib (conda, pip, source): pip
  • Any other relevant information:

Mars-Mah3r avatar Mar 08 '23 02:03 Mars-Mah3r

Yeah, that's because we don't yet provide pre-built M1 wheels, and pyg-lib is not yet on PyPi. You can try to run via

pip install git+https://github.com/pyg-team/pyg-lib.git

rusty1s avatar Mar 08 '23 04:03 rusty1s

Yeah, that's because we don't yet provide pre-built M1 wheels, and pyg-lib is not yet on PyPi. You can try to run via

pip install git+https://github.com/pyg-team/pyg-lib.git

now i get this error:

mars@Mars-MacBook-Pro ~ % pip install git+https://github.com/pyg-team/pyg-lib.git --use-pep517 
Collecting git+https://github.com/pyg-team/pyg-lib.git
  Cloning https://github.com/pyg-team/pyg-lib.git to /private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-req-build-3z23ydr9
  Running command git clone --filter=blob:none --quiet https://github.com/pyg-team/pyg-lib.git /private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-req-build-3z23ydr9
  Resolved https://github.com/pyg-team/pyg-lib.git to commit 76ef32a22cb43e9f1bb66a0298acfa13f48ef23e
  Running command git submodule update --init --recursive -q
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: pyg-lib
  Building wheel for pyg-lib (pyproject.toml) ... error
  error: subprocess-exited-with-error
  
  × Building wheel for pyg-lib (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [70 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.macosx-10.9-universal2-cpython-310
      creating build/lib.macosx-10.9-universal2-cpython-310/pyg_lib
      copying pyg_lib/home.py -> build/lib.macosx-10.9-universal2-cpython-310/pyg_lib
      copying pyg_lib/__init__.py -> build/lib.macosx-10.9-universal2-cpython-310/pyg_lib
      copying pyg_lib/testing.py -> build/lib.macosx-10.9-universal2-cpython-310/pyg_lib
      copying pyg_lib/_triton.py -> build/lib.macosx-10.9-universal2-cpython-310/pyg_lib
      creating build/lib.macosx-10.9-universal2-cpython-310/pyg_lib/sampler
      copying pyg_lib/sampler/__init__.py -> build/lib.macosx-10.9-universal2-cpython-310/pyg_lib/sampler
      creating build/lib.macosx-10.9-universal2-cpython-310/pyg_lib/ops
      copying pyg_lib/ops/scatter_reduce.py -> build/lib.macosx-10.9-universal2-cpython-310/pyg_lib/ops
      copying pyg_lib/ops/__init__.py -> build/lib.macosx-10.9-universal2-cpython-310/pyg_lib/ops
      running build_ext
      Traceback (most recent call last):
        File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
          main()
        File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
        File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel
          return _build_backend().build_wheel(wheel_directory, config_settings,
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 413, in build_wheel
          return self._build_with_temp_dir(['bdist_wheel'], '.whl',
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 398, in _build_with_temp_dir
          self.run_setup()
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 484, in run_setup
          super(_BuildMetaLegacyBackend,
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 335, in run_setup
          exec(code, locals())
        File "<string>", line 132, in <module>
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/__init__.py", line 108, in setup
          return distutils.core.setup(**attrs)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup
          return run_commands(dist)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
          dist.run_commands()
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
          self.run_command(cmd)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 1221, in run_command
          super().run_command(command)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/wheel/bdist_wheel.py", line 325, in run
          self.run_command("build")
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
          self.distribution.run_command(command)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 1221, in run_command
          super().run_command(command)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 131, in run
          self.run_command(cmd_name)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
          self.distribution.run_command(command)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 1221, in run_command
          super().run_command(command)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/command/build_ext.py", line 84, in run
          _build_ext.run(self)
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
          self.build_extensions()
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/build_ext.py", line 467, in build_extensions
          self._build_extensions_serial()
        File "/private/var/folders/gq/qt59drb965v4rlchdht8jmzr0000gn/T/pip-build-env-qtvj84s5/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/build_ext.py", line 493, in _build_extensions_serial
          self.build_extension(ext)
        File "<string>", line 41, in build_extension
      ModuleNotFoundError: No module named 'torch'
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for pyg-lib
Failed to build pyg-lib
ERROR: Could not build wheels for pyg-lib, which is required to install pyproject.toml-based projects
mars@Mars-MacBook-Pro ~ %

Mars-Mah3r avatar Mar 08 '23 11:03 Mars-Mah3r

You need to install PyTorch beforehand before being able to install pyg-lib from source.

rusty1s avatar Mar 10 '23 06:03 rusty1s

You need to install PyTorch beforehand before being able to install pyg-lib from source.

Pytorch is installed

Mars-Mah3r avatar Mar 10 '23 10:03 Mars-Mah3r

I am a bit confused. We currently don't use pyproject.toml for pyg-lib. Not totally sure why it complains about it TBH.

rusty1s avatar Mar 10 '23 12:03 rusty1s

I meet this error on my m1 mac: >>> import pyg_lib Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/pyg_lib/__init__.py", line 38, in <module> load_library('libpyg') File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/pyg_lib/__init__.py", line 35, in load_library torch.ops.load_library(spec.origin) File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/torch/_ops.py", line 573, in load_library ctypes.CDLL(path) File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/ctypes/__init__.py", line 374, in __init__ self._handle = _dlopen(self._name, mode) OSError: dlopen(/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/libpyg.so, 0x0006): Library not loaded: '/Users/runner/hostedtoolcache/Python/3.10.8/x64/lib/libpython3.10.dylib' Referenced from: '/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/libpyg.so' Reason: tried: '/Users/runner/hostedtoolcache/Python/3.10.8/x64/lib/libpython3.10.dylib' (no such file), '/usr/local/lib/libpython3.10.dylib' (no such file), '/usr/lib/libpython3.10.dylib' (no such file) my ENV INFO:

  • torch 1.13.0 pypi_0 pypi
  • torch-cluster 1.6.0 pypi_0 pypi
  • torch-geometric 2.2.0 pypi_0 pypi
  • torch-scatter 2.1.0 pypi_0 pypi
  • torch-sparse 0.6.16 pypi_0 pypi
  • torchaudio 0.13.0 pypi_0 pypi
  • torchvision 0.14.0 pypi_0 pypi
  • python 3.10.9 h218abb5_2
  • python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
  • python_abi 3.10 2_cp310 conda-forge
  • pyg-lib 0.1.0+pt113 pypi_0 pypi

Joe-Miccio avatar Mar 14 '23 02:03 Joe-Miccio

I meet this error on my m1 mac: >>> import pyg_lib Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/pyg_lib/__init__.py", line 38, in <module> load_library('libpyg') File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/pyg_lib/__init__.py", line 35, in load_library torch.ops.load_library(spec.origin) File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/torch/_ops.py", line 573, in load_library ctypes.CDLL(path) File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/ctypes/__init__.py", line 374, in __init__ self._handle = _dlopen(self._name, mode) OSError: dlopen(/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/libpyg.so, 0x0006): Library not loaded: '/Users/runner/hostedtoolcache/Python/3.10.8/x64/lib/libpython3.10.dylib' Referenced from: '/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/libpyg.so' Reason: tried: '/Users/runner/hostedtoolcache/Python/3.10.8/x64/lib/libpython3.10.dylib' (no such file), '/usr/local/lib/libpython3.10.dylib' (no such file), '/usr/lib/libpython3.10.dylib' (no such file) my ENV INFO:

  • torch 1.13.0 pypi_0 pypi
  • torch-cluster 1.6.0 pypi_0 pypi
  • torch-geometric 2.2.0 pypi_0 pypi
  • torch-scatter 2.1.0 pypi_0 pypi
  • torch-sparse 0.6.16 pypi_0 pypi
  • torchaudio 0.13.0 pypi_0 pypi
  • torchvision 0.14.0 pypi_0 pypi
  • python 3.10.9 h218abb5_2
  • python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
  • python_abi 3.10 2_cp310 conda-forge
  • pyg-lib 0.1.0+pt113 pypi_0 pypi

i checked the install infomation and found that when i use pip install pyg-lib -f https://data.pyg.org/whl/torch-1.13.0+cpu.html to install pyg_lib, it shows :Using cached https://data.pyg.org/whl/torch-1.13.0%2Bcpu/pyg_lib-0.1.0%2Bpt113-cp310-cp310-macosx_10_15_x86_64.whl (638 kB), it installed the x86_64 version, not the arm64 version.

Joe-Miccio avatar Mar 14 '23 02:03 Joe-Miccio

reinstalled the python3.7:

  • python 3.7.16 h218abb5_0
  • torch 1.13.0 pypi_0 pypi
  • torch-cluster 1.6.0 pypi_0 pypi
  • torch-geometric 2.2.0 pypi_0 pypi
  • torch-scatter 2.1.0 pypi_0 pypi
  • torch-sparse 0.6.16 pypi_0 pypi
  • torch-spline-conv 1.2.1 pypi_0 pypi
  • torchaudio 0.13.0 pypi_0 pypi
  • torchvision 0.14.0 pypi_0 py
  • pyg-lib 0.1.0+pt113 pypi_0 pypi

still have same error:

import pyg_lib Traceback (most recent call last): File "", line 1, in File "/opt/homebrew/anaconda3/envs/py37/lib/python3.7/site-packages/pyg_lib/init.py", line 38, in load_library('libpyg') File "/opt/homebrew/anaconda3/envs/py37/lib/python3.7/site-packages/pyg_lib/init.py", line 35, in load_library torch.ops.load_library(spec.origin) File "/opt/homebrew/anaconda3/envs/py37/lib/python3.7/site-packages/torch/_ops.py", line 573, in load_library ctypes.CDLL(path) File "/opt/homebrew/anaconda3/envs/py37/lib/python3.7/ctypes/init.py", line 364, in init self._handle = _dlopen(self._name, mode) OSError: dlopen(/opt/homebrew/anaconda3/envs/py37/lib/python3.7/site-packages/libpyg.so, 0x0006): Library not loaded: '/usr/local/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/Python' Referenced from: '/opt/homebrew/anaconda3/envs/py37/lib/python3.7/site-packages/libpyg.so' Reason: tried: '/usr/local/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/Python' (no such file), '/Library/Frameworks/Python.framework/Versions/3.10/Python' (no such file), '/System/Library/Frameworks/Python.framework/Versions/3.10/Python' (no such file)

i installed pyg_lib by wheel this time 'pyg_lib-0.1.0+pt113-cp37-cp37m-macosx_10_15_x86_64.whl'

Joe-Miccio avatar Mar 14 '23 03:03 Joe-Miccio

Yes, wheel support for M1 is not supported at the moment. You would need to install from source for pyg-lib on M1.

rusty1s avatar Mar 15 '23 13:03 rusty1s

Hmm, @Joe-Miccio 's error may not be limited to M1 Macs -- I'm also getting the same error, but on an Intel Mac. Any ideas?

I meet this error on my m1 mac: >>> import pyg_lib Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/pyg_lib/__init__.py", line 38, in <module> load_library('libpyg') File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/pyg_lib/__init__.py", line 35, in load_library torch.ops.load_library(spec.origin) File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/torch/_ops.py", line 573, in load_library ctypes.CDLL(path) File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/ctypes/__init__.py", line 374, in __init__ self._handle = _dlopen(self._name, mode) OSError: dlopen(/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/libpyg.so, 0x0006): Library not loaded: '/Users/runner/hostedtoolcache/Python/3.10.8/x64/lib/libpython3.10.dylib' Referenced from: '/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/libpyg.so' Reason: tried: '/Users/runner/hostedtoolcache/Python/3.10.8/x64/lib/libpython3.10.dylib' (no such file), '/usr/local/lib/libpython3.10.dylib' (no such file), '/usr/lib/libpython3.10.dylib' (no such file) my ENV INFO:

  • torch 1.13.0 pypi_0 pypi
  • torch-cluster 1.6.0 pypi_0 pypi
  • torch-geometric 2.2.0 pypi_0 pypi
  • torch-scatter 2.1.0 pypi_0 pypi
  • torch-sparse 0.6.16 pypi_0 pypi
  • torchaudio 0.13.0 pypi_0 pypi
  • torchvision 0.14.0 pypi_0 pypi
  • python 3.10.9 h218abb5_2
  • python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
  • python_abi 3.10 2_cp310 conda-forge
  • pyg-lib 0.1.0+pt113 pypi_0 pypi

semihcanturk avatar Mar 21 '23 21:03 semihcanturk

Looks like your system cannot find your python env. Can you add it to DYLD_LIBRARY_PATH?

rusty1s avatar Mar 22 '23 05:03 rusty1s

Hmm, @Joe-Miccio 's error may not be limited to M1 Macs -- I'm also getting the same error, but on an Intel Mac. Any ideas?

I meet this error on my m1 mac: >>> import pyg_lib Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/pyg_lib/__init__.py", line 38, in <module> load_library('libpyg') File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/pyg_lib/__init__.py", line 35, in load_library torch.ops.load_library(spec.origin) File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/torch/_ops.py", line 573, in load_library ctypes.CDLL(path) File "/opt/homebrew/anaconda3/envs/test/lib/python3.10/ctypes/__init__.py", line 374, in __init__ self._handle = _dlopen(self._name, mode) OSError: dlopen(/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/libpyg.so, 0x0006): Library not loaded: '/Users/runner/hostedtoolcache/Python/3.10.8/x64/lib/libpython3.10.dylib' Referenced from: '/opt/homebrew/anaconda3/envs/test/lib/python3.10/site-packages/libpyg.so' Reason: tried: '/Users/runner/hostedtoolcache/Python/3.10.8/x64/lib/libpython3.10.dylib' (no such file), '/usr/local/lib/libpython3.10.dylib' (no such file), '/usr/lib/libpython3.10.dylib' (no such file) my ENV INFO:

  • torch 1.13.0 pypi_0 pypi
  • torch-cluster 1.6.0 pypi_0 pypi
  • torch-geometric 2.2.0 pypi_0 pypi
  • torch-scatter 2.1.0 pypi_0 pypi
  • torch-sparse 0.6.16 pypi_0 pypi
  • torchaudio 0.13.0 pypi_0 pypi
  • torchvision 0.14.0 pypi_0 pypi
  • python 3.10.9 h218abb5_2
  • python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
  • python_abi 3.10 2_cp310 conda-forge
  • pyg-lib 0.1.0+pt113 pypi_0 pypi

I installed pyg by this https://github.com/rusty1s/pytorch_scatter/issues/241#issuecomment-1383939911, and its helpful. The pyg_lib is installed by pip install pyg-lib -f https://data.pyg.org/whl/nightly/torch-${TORCH}+${CUDA}.html

pytorch version = 1.13.0, not sure whether different version is work. Maybe this can help you.

Joe-Miccio avatar Mar 22 '23 05:03 Joe-Miccio

Yes, wheel support for M1 is not supported at the moment. You would need to install from source for pyg-lib on M1.

I tried installing it from source but it didn't work either.

pip install git+https://github.com/pyg-team/pyg-lib.git
Collecting git+https://github.com/pyg-team/pyg-lib.git
  Cloning https://github.com/pyg-team/pyg-lib.git to /private/var/folders/bl/j35v6zps6yvgx5y0nwp4h7080000gn/T/pip-req-build-stsb4s67
  Running command git clone --filter=blob:none --quiet https://github.com/pyg-team/pyg-lib.git /private/var/folders/bl/j35v6zps6yvgx5y0nwp4h7080000gn/T/pip-req-build-stsb4s67
  Resolved https://github.com/pyg-team/pyg-lib.git to commit 029193467fe4ec61516e78859b7a8cfde3c40919
  Running command git submodule update --init --recursive -q
  Preparing metadata (setup.py) ... done
Building wheels for collected packages: pyg-lib
  Building wheel for pyg-lib (setup.py) ... error
  error: subprocess-exited-with-error
  
  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> [21 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.macosx-11.0-arm64-cpython-310
      creating build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      copying pyg_lib/home.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      copying pyg_lib/__init__.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      copying pyg_lib/testing.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      copying pyg_lib/_triton.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      creating build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/sampler
      copying pyg_lib/sampler/__init__.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/sampler
      creating build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/ops
      copying pyg_lib/ops/scatter_reduce.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/ops
      copying pyg_lib/ops/__init__.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/ops
      creating build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/partition
      copying pyg_lib/partition/__init__.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/partition
      running build_ext
      /private/var/folders/bl/j35v6zps6yvgx5y0nwp4h7080000gn/T/pip-req-build-stsb4s67/setup.py:77: UserWarning: Building times of 'pyg-lib' can be heavily improved by installing 'ninja': `pip install ninja`
        warnings.warn("Building times of 'pyg-lib' can be heavily improved"
      error: [Errno 2] No such file or directory: 'cmake'
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for pyg-lib
  Running setup.py clean for pyg-lib
Failed to build pyg-lib
ERROR: Could not build wheels for pyg-lib, which is required to install pyproject.toml-based projects```

ksmdnl avatar Jul 19 '23 09:07 ksmdnl

Yes, wheel support for M1 is not supported at the moment. You would need to install from source for pyg-lib on M1.

I tried installing it from source but it didn't work either.

pip install git+https://github.com/pyg-team/pyg-lib.git
Collecting git+https://github.com/pyg-team/pyg-lib.git
  Cloning https://github.com/pyg-team/pyg-lib.git to /private/var/folders/bl/j35v6zps6yvgx5y0nwp4h7080000gn/T/pip-req-build-stsb4s67
  Running command git clone --filter=blob:none --quiet https://github.com/pyg-team/pyg-lib.git /private/var/folders/bl/j35v6zps6yvgx5y0nwp4h7080000gn/T/pip-req-build-stsb4s67
  Resolved https://github.com/pyg-team/pyg-lib.git to commit 029193467fe4ec61516e78859b7a8cfde3c40919
  Running command git submodule update --init --recursive -q
  Preparing metadata (setup.py) ... done
Building wheels for collected packages: pyg-lib
  Building wheel for pyg-lib (setup.py) ... error
  error: subprocess-exited-with-error
  
  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> [21 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.macosx-11.0-arm64-cpython-310
      creating build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      copying pyg_lib/home.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      copying pyg_lib/__init__.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      copying pyg_lib/testing.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      copying pyg_lib/_triton.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib
      creating build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/sampler
      copying pyg_lib/sampler/__init__.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/sampler
      creating build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/ops
      copying pyg_lib/ops/scatter_reduce.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/ops
      copying pyg_lib/ops/__init__.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/ops
      creating build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/partition
      copying pyg_lib/partition/__init__.py -> build/lib.macosx-11.0-arm64-cpython-310/pyg_lib/partition
      running build_ext
      /private/var/folders/bl/j35v6zps6yvgx5y0nwp4h7080000gn/T/pip-req-build-stsb4s67/setup.py:77: UserWarning: Building times of 'pyg-lib' can be heavily improved by installing 'ninja': `pip install ninja`
        warnings.warn("Building times of 'pyg-lib' can be heavily improved"
      error: [Errno 2] No such file or directory: 'cmake'
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for pyg-lib
  Running setup.py clean for pyg-lib
Failed to build pyg-lib
ERROR: Could not build wheels for pyg-lib, which is required to install pyproject.toml-based projects```

UPDATE: Installing rdkit seems to solve the issue somehow.

ksmdnl avatar Jul 20 '23 06:07 ksmdnl

Yes, you need cmake for installation.

rusty1s avatar Jul 20 '23 06:07 rusty1s