Pablo Velasco

[Here](https://github.com/cbinyu/misc_preprocessing/blob/master/completeJSONs.sh) is the file we use at our center. Feel free to use if you find it useful.

Here ([spec2nii](https://github.com/wtclarke/spec2nii)) is another spectroscopy-to-nifti converter listed in the [dcm2niix README.md](https://github.com/rordenlab/dcm2niix/blob/e16904ec3d070dee997e417356979586cebf657d/README.md#alternatives).

@tjhendrickson , could you show an example of the DICOM folder organization? Is it something like this?: ``` my_DICOMs \ |- run_1 \ | |- run_1_volume_1.dcm | |- run_1_volume_2.dcm |...

Actually, the physio data extraction has not been added yet to the `master` branch. PR #446 addresses it, but it is still under review. You can test that PR, to...

Looking at the `dicominfo` file, it didn't "see" series number 30 (the one with the PhysioLog DICOM). I'm not sure why. Do you mind posting the full `heudiconv` call? I...

Hi @marcomeixner, Can you please try to run: ``` sudo docker run --rm -it -v /media/SamSSD/QA_temp:/base nipy/heudiconv:latest -d /base/Dicom/sub-{subject}/ses-{session}/SCANS/3/DICOM/*.dcm -o /base/Nifti/ -f /base/Nifti/code/heuristic.py -s 01 -ss 001 -c dcm2niix -b...

> another consideration while looking at this - WDYT about fetching the data via datalad instead of hosting it in the repo? Of course, that would be great. You can...

I have written a module to do this (and also add a "NumberOfVolumes" field to the functional jsons), and I would like to add it to this repo. To run...

@AKSoo, Until a more permanent solution is found to support for echo naming in the heuristic file, something you can do is modify convert.py. Where it says: ``` supported_multiecho =...

Hi @yushiangsu, Regarding the order of the runs, you can check [what we do in our custom heuristic file](https://github.com/cbinyu/heudiconv/blob/f33c5fdcb6df33e12c99b8490206ed8ab6ee4e4d/heudiconv/heuristics/cbi_heuristic_simple.py#L190-L229) to sort by acquisition date and time, precisely for situations like...