pygom
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publichealthengland
ODE modelling in Python
A C file was throwing the error each time and manually recompiling the corresponding ".pyx" to overwrite the C file ending up sorting the issue. If the devs want to...
Use of get_transition_graph method with arument show=True causes AttributeError (see below). Returned graph can be rendered as pdf using method .render(filename='filename', format='pdf') though. This maybe as the dependent package graphviz...
I have become unfamiliar with creating forks of repositories and then making pull requests. In the posscess there was a mistake through trying import missing code.
If derived_param argument is used when intiating a model, the later use of the pygom.model.epi_analysis.R0 can cause a NameError. So for example if the term 'lambda__' was being used for...
Hello, I just did the upgrade to 22.04 LTS, I was using PyGom for a covid-related project (very useful library btw). Unfortunately the installation on Python3.10 seems to be broken....
When running certain stochastic simulation through SimulateOde.simulate_jump methods the error "TypeError: argument of type ‘bool’ is not iterable" occasionally occurs. This happens in line 552 in function tauLeap of module...
I work with Martin Grunnil and he has opened a previous issue (#58) on this subject on my behalf. In addition, no one has been able to use pygom on...
A colleague of mine reported a few issues with installing on a Mac. I am sorry for not giving more information. Partly I am putting this issue up in case...
I am trying to think of how you would stochastically simulate a model with a periodic term within pygom. The common_models module intialisis a determiistic SIS model with periodic transmision...