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In v5.6.3 and other v5.6 the SPARQL tab doesn't have a query pane. Win11 There is an error associated with opening the SPARQL Query tab ERROR 14:42:01 Uncaught Exception in...

pwin

Hi! I'm experiencing a high CPU consumption on Protege on MacOS Ventura 13.6, This difference came to my attention after the passage from 5.6.0 to 5.6.3. I'm trying to propose...

Kvantumo

Factpluplus and Protege 5.6.0

5

Downloaded and installed Windows version (.exe) of Protege 5.6.0. I installed the factpluplus plugin the first time I ran Protege 5.6, the file `uk.ac.manchester.cs.owl.factplusplus-1.6.5.jar` is indeed in the plugin subfolder....

thistlillo

Problem in Data Property inference with swrl in protegé

1

I wrote a SWRL rule in this way: `Guarani(?g)->AmphibiousSpeed(?g,45) ` I already have a class Guarani and a data property AmphibiousSpeed. I already created an individual guarani0. It feels like...

andredemori

Upgrade HermiT to 1.4.0.456

1

See https://github.com/protegeproject/protege/issues/799 for context

matthewhorridge

In the Usage tab, Defined class names are now parsed making it impossible to jump to the class (only its components). Maybe this is a configurable setting I've not found....

rwynne

``` java.lang.NullPointerException: null at org.obolibrary.obo2owl.OWLAPIObo2Owl.translateShorthandIdToExpandedId(OWLAPIObo2Owl.java:1739) ~[na:na] at org.obolibrary.obo2owl.OWLAPIObo2Owl.oboIdToIRI_load(OWLAPIObo2Owl.java:1679) ~[na:na] at org.obolibrary.obo2owl.OWLAPIObo2Owl.oboIdToIRI(OWLAPIObo2Owl.java:1643) ~[na:na] at org.obolibrary.oboformat.writer.OBOFormatWriter$OWLOntologyNameProvider.getName(OBOFormatWriter.java:992) ~[na:na] at org.semanticweb.owlapi.oboformat.OBOFormatRenderer$1.getName(OBOFormatRenderer.java:74) ~[na:na] at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:622) ~[na:na] at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:351) ~[na:na] at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:197) ~[na:na] at org.semanticweb.owlapi.oboformat.OBOFormatRenderer.render(OBOFormatRenderer.java:88) ~[na:na]...

cbielow

Parsing OBO file fails if it imports another OBO file

1

Trying to open https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo in Protege 5.5 fails. The log shows: ``` INFO 11:02:13 Finished loading https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo ERROR 11:02:13 An error occurred whilst loading the ontology at https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo. Cause: Could...

cbielow

When opening a file, which cannot be parsed (due to parse errors), see e.g. #28, Protege will simply not show anything in the user interface. It behaves as if the...

cbielow

Can not save the file

4

Closed issue

Vitaly-A-Ivanov