glow
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An open-source toolkit for large-scale genomic analysis
## About this PR 📦 Updates [org.yaml:snakeyaml](https://bitbucket.org/snakeyaml/snakeyaml/src) from `2.2` to `2.3` ## Usage ✅ **Please merge!** I'll automatically update this PR to resolve conflicts as long as you don't change...
## About this PR 📦 Updates [org.apache.commons:commons-lang3](https://commons.apache.org/proper/commons-lang/) from `3.14.0` to `3.17.0` ## Usage ✅ **Please merge!** I'll automatically update this PR to resolve conflicts as long as you don't change...
**Description:** I am encountering an issue when trying to convert a VCF file to BGEN format using the Glow library on Databricks in Azure. **Context:** I am using the following...
Hi, I've tried to read some single sample VCF files, do some filtering and merge them while writing the result as a sharded VCF. To do this I used my...
Writing into delta file was working fine last week. Same operation same file getting com.databricks.sql.io.FileReadException: Error while reading file *.bim
Please update glow to support numpy v2 :) Here is the error: ```python3 File /opt/anaconda/envs/rep-py-spark3.5-glow/lib/python3.12/site-packages/glow/__init__.py:32 28 from . import functions 30 extend_all(functions) ---> 32 from .wgr import * # For...
## About this PR 📦 Updates [com.github.samtools:htsjdk](https://samtools.github.io/htsjdk/) from `3.0.5` to `4.3.0` ⚠ ## Usage ✅ **Please merge!** I'll automatically update this PR to resolve conflicts as long as you don't...
## About this PR 📦 Updates * io.netty:netty-all * [io.netty:netty-handler](https://github.com/netty/netty) * [io.netty:netty-transport-native-epoll](https://github.com/netty/netty) from `4.1.96.Final` to `4.1.122.Final` ## Usage ✅ **Please merge!** I'll automatically update this PR to resolve conflicts as...
Spark 4.0.0 was released a few days ago; is there a rough timeline for when a Glow build for Spark 4 will be available on mvnrepository.com?
## About this PR 📦 Updates * [org.apache.spark:spark-catalyst](https://spark.apache.org/) * [org.apache.spark:spark-core](https://spark.apache.org/) * [org.apache.spark:spark-mllib](https://spark.apache.org/) * [org.apache.spark:spark-sql](https://spark.apache.org/) from `3.5.1` to `3.5.6` ## Usage ✅ **Please merge!** I'll automatically update this PR to resolve...