Require setuptools, prody/utilities/misctools.py imports pkg_resources

[hrnciar]

[jamesmkrieger]

Are you sure this is only needed for Python 2.7?

[hrnciar]

Oh seems like I edited the wrong line. It should be the other way around. I am not sure if it applies also to Python 2.7, though.

[jamesmkrieger]

Ok. I’ll try and check it. Thanks

[jamesmkrieger]

why do we need setuptools anyway?

[jamesmkrieger]

I've updated it and it works now as follows:

$ pip install -Ue .
Obtaining file:///mnt/c/Users/james/code/scipion3_new/software/em/ProDy
  Installing build dependencies ... done
  Checking if build backend supports build_editable ... done
  Getting requirements to build editable ... done
  Preparing editable metadata (pyproject.toml) ... done
Requirement already satisfied: biopython in /home/jkrieger/anaconda3/envs/scipion3/lib/python3.8/site-packages (from ProDy==2.3.1) (1.79)
Requirement already satisfied: pyparsing in /home/jkrieger/anaconda3/envs/scipion3/lib/python3.8/site-packages (from ProDy==2.3.1) (3.0.7)
Requirement already satisfied: setuptools in /home/jkrieger/anaconda3/envs/scipion3/lib/python3.8/site-packages (from ProDy==2.3.1) (60.9.3)
Requirement already satisfied: scipy in /home/jkrieger/anaconda3/envs/scipion3/lib/python3.8/site-packages (from ProDy==2.3.1) (1.8.0)
Requirement already satisfied: numpy<1.24,>=1.10 in /home/jkrieger/anaconda3/envs/scipion3/lib/python3.8/site-packages (from ProDy==2.3.1) (1.18.4)
Building wheels for collected packages: ProDy
  Building editable for ProDy (pyproject.toml) ... done
  Created wheel for ProDy: filename=ProDy-2.3.1-0.editable-cp38-cp38-linux_x86_64.whl size=6588 sha256=9ac2e1a3590e104dc67ea48f2683b168b109d6faaaa588c9c2cb39788678bb74
  Stored in directory: /tmp/pip-ephem-wheel-cache-dmwx6c8a/wheels/50/74/d2/00fc92a611f32f30444b5a6a0435bcca8042b3b835e7c3984d
Successfully built ProDy
Installing collected packages: ProDy
  Attempting uninstall: ProDy
    Found existing installation: ProDy 2.3.1
    Uninstalling ProDy-2.3.1:
      Successfully uninstalled ProDy-2.3.1
Successfully installed ProDy-2.3.1

everything works fine without as far as I can tell too though

[jamesmkrieger]

the answer may actually be that it's already in pyproject.toml

[jamesmkrieger]

probably this is the good way to do it now