Florian Privé

icon indicating a website link https://privefl.github.io/ icon indicating an email [email protected]

icon company National Center for Register-based Research (NCRR, Aarhus University) icon location Aarhus, Denmark // Lyon, France icon location Senior Researcher (2022–) in Statistical Human Genetics • Postdoc (2019–2021) • PhD student (2016–2019) • ENSIMAG (2013–2016)

Results 380 comments of Florian Privé

batchtools_slurm futures block (Was: stdout/stderr to log file only when using slurm?)

Yeah everything is working and I find {future} and {future.batchtools} very useful for my purpose (very convenient for running things on the cluster). It is just that my use might...

batchtools_slurm futures block (Was: stdout/stderr to log file only when using slurm?)

I think you are right about the `gc()`, this is what blocks my session. Also note that my session is not blocked if the loop finishes submitting all jobs before...

batchtools_slurm futures block (Was: stdout/stderr to log file only when using slurm?)

Thanks Henrik!

batchtools_slurm futures block (Was: stdout/stderr to log file only when using slurm?)

Thanks for this. I don't think my use case is very uncommon; when you schedule jobs on a cluster, you usually have them as independent, running things at their pace,...

batchtools_slurm futures block (Was: stdout/stderr to log file only when using slurm?)

Yes the export of the globals is very convenient. If a submitonejob becomes available, then it will be very useful to me, and at least other in my team.

batchtools_slurm futures block (Was: stdout/stderr to log file only when using slurm?)

@johanneskoch94 For now, I'm just making sure I stop the loop after all jobs have been submitted, but before getting any result back.

[Feature proposal] Expose xgboost/c_api.h in R package for LinkingTo

This would come in very handy for me as well.

Ldpred2-auto subset SNPs or genomewide fit?

No, I would not recommend it. Perhaps, if there is one chromosome (or one region) contributing a lot, you could try running it once for this region, and once genome-wide...

Ldpred2-auto subset SNPs or genomewide fit?

Also, I would not trust enrichments from S-LDSC, I think they are often overestimated.

Can 'delta' be 0?

I guess it can, but it will either lead to possible divergence, or provide similar results as with e.g. delta=0.001. Have you tried it?