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Input/output error: .prisms_jobs

Open sjtuzhanglei opened this issue 1 year ago • 4 comments

++ status: complete next task: None mv run.final Complete VASP job: /pscratch/sd/v/voz5005/RuO2/casm/211/srun64/casm/training_data/SCEL2_2_1_1_0_0_1/6/calctype.default/run.final rm: gzip:

Traceback (most recent call last): File "", line 1, in File "/global/homes/v/voz5005/.conda/envs/casm/lib/python3.9/site-packages/casm/vaspwrapper/relax.py", line 122, in run super(Relax, self).run() File "/global/homes/v/voz5005/.conda/envs/casm/lib/python3.9/site-packages/casm/vaspwrapper/vasp_calculator_base.py", line 585, in run complete_job() File "/global/homes/v/voz5005/.conda/envs/casm/lib/python3.9/site-packages/casm/vaspwrapper/vasp_calculator_base.py", line 36, in complete_job jobs.complete_job(jobid) File "/global/homes/v/voz5005/.conda/envs/casm/lib/python3.9/site-packages/prisms_jobs/jobdb.py", line 1037, in complete_job db = JobDB(dbpath) #pylint: disable=invalid-name File "/global/homes/v/voz5005/.conda/envs/casm/lib/python3.9/site-packages/prisms_jobs/jobdb.py", line 218, in init self.connect(dbpath) File "/global/homes/v/voz5005/.conda/envs/casm/lib/python3.9/site-packages/prisms_jobs/jobdb.py", line 235, in connect dbpath = config.dbpath() File "/global/homes/v/voz5005/.conda/envs/casm/lib/python3.9/site-packages/prisms_jobs/config.py", line 250, in dbpath configure() File "/global/homes/v/voz5005/.conda/envs/casm/lib/python3.9/site-packages/prisms_jobs/config.py", line 278, in configure settings = read_config() File "/global/homes/v/voz5005/.conda/envs/casm/lib/python3.9/site-packages/prisms_jobs/config.py", line 202, in read_config os.mkdir(dir) OSError: [Errno 5] Input/output error: '/global/homes/v/voz5005/.prisms_jobs' Creating config directory: /global/homes/v/voz5005/.prisms_jobs

sjtuzhanglei avatar Nov 12 '23 15:11 sjtuzhanglei

Is this on perlmutter?

xivh avatar Nov 13 '23 19:11 xivh

Yes perlmutter.

On Mon, Nov 13, 2023 at 2:20 PM xivh @.***> wrote:

Is this on perlmutter?

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-- Lei Zhang Postdoc Scholar Mechanical Engineering Carnegie Mellon University Google Scholar https://scholar.google.com/citations?hl=en&view_op=list_works&gmla=AJsN-F51HKnfWWVxbsFk4uAWX43G9CzcwBr_848Z2BxrFiXa0q6bPGZqhzAADPpA0vojEKOVP8bkTFTV3wDI8XvJfy5V2hvIuRNadTccjO0J3niAX63sVSA&user=139-zKwAAAAJ Linkedin https://www.linkedin.com/in/lei-zhang-0b8aa126/

sjtuzhanglei avatar Nov 13 '23 19:11 sjtuzhanglei

It is working for me using these branches: https://github.com/xivh/CASMpython/tree/local https://github.com/xivh/prisms_jobs/tree/local

I don't think I changed anything related to writing the prisms jobs directory though.

xivh avatar Nov 13 '23 19:11 xivh

Did you run this on the morning of the 12th? I had some jobs fail then due to perlmutter maintenance.

xivh avatar Nov 13 '23 19:11 xivh