precice
Partitioned heat conduction (G+Smo participant)
Summary: Partitioned heat conduction G+Smo (IsoGeometric Analysis) participant NOTE: G+Smo adapter is a submodule of the G+Smo library, to run the tutorial you need to configure G+Smo main library.
- [x] Updated README.md file, which contains instructions on how to configure G+Smo library with preCICE adapter.
- [x] Added gismo-executable folder to contain the symbolic link for the G+Smo executable.
This PR is marked as a draft because the documentation for the G+Smo adapter requires updates.
@Crazy-Rich-Meghan do you plan to continue this development? It seems to currently be in draft state. We are happy to help get it in a good state!
Hi everyone,
Sorry for the delay! I have updated the partitioned heat conduction example from our side, this version supports the direct mesh access feature. To run the benchmark you need to do the following:
1. Clone G+Smo
2. cmake .. -DCMAKE_BUILD_TYPE=Release -DGISMO_OPTIONAL="gsPreCICE"
3. cmake --build build --target partitioned-heat-conduction -j 8
4. Install this example systemwide make install partitioned-heat-conduction
5. Go to the neumann-gismo folder run the Neumann participant with the run script.
6. Go to the dirichlet-gismo folder run the Dirichlet participant with the run script.
Let me know if you get stuck somewhere!
Hi @Crazy-Rich-Meghan,
thanks for the updates! I am now trying to build on my system, based on the stable branch (Commit ef4c754785cf4949d3a89b916eed807b74b97a9b, October 2).
I do get a building error, though (g++ (Ubuntu 12.3.0-1ubuntu1~22.04.2) 12.3.0):
[ 97%] Building CXX object optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/partitioned-heat-conduction.cpp.o
/home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp: In function ‘int main(int, char**)’:
/home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:110:17: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’}
110 | for (; domIt->good(); domIt->next(), k++ )
| ^~
/home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:110:32: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’}
110 | for (; domIt->good(); domIt->next(), k++ )
| ^~
/home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:120:15: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’}
120 | for (domIt->reset(); domIt->good(); domIt->next(), k++ )
| ^~
/home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:120:31: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’}
120 | for (domIt->reset(); domIt->good(); domIt->next(), k++ )
| ^~
/home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:120:46: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’}
120 | for (domIt->reset(); domIt->good(); domIt->next(), k++ )
| ^~
/home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:124:29: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’}
124 | QuRule->mapTo( domIt->lowerCorner(), domIt->upperCorner(),
| ^~
/home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:124:51: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’}
124 | QuRule->mapTo( domIt->lowerCorner(), domIt->upperCorner(),
| ^~
gmake[3]: *** [optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/build.make:76: optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/partitioned-heat-conduction.cpp.o] Error 1
gmake[2]: *** [CMakeFiles/Makefile2:1940: optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/all] Error 2
gmake[1]: *** [CMakeFiles/Makefile2:1947: optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/rule] Error 2
gmake: *** [Makefile:907: partitioned-heat-conduction] Error 2
By the way, I edited your instructions above to add a number next to the -j flag. Without a number, it will use as many threads as parallelizable build targets, which might fill the memory completely and make a system crash.
Hi @Crazy-Rich-Meghan,
thanks for the updates! I am now trying to build on my system, based on the stable branch (Commit ef4c754785cf4949d3a89b916eed807b74b97a9b, October 2).
I do get a building error, though (
g++ (Ubuntu 12.3.0-1ubuntu1~22.04.2) 12.3.0):[ 97%] Building CXX object optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/partitioned-heat-conduction.cpp.o /home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp: In function ‘int main(int, char**)’: /home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:110:17: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’} 110 | for (; domIt->good(); domIt->next(), k++ ) | ^~ /home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:110:32: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’} 110 | for (; domIt->good(); domIt->next(), k++ ) | ^~ /home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:120:15: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’} 120 | for (domIt->reset(); domIt->good(); domIt->next(), k++ ) | ^~ /home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:120:31: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’} 120 | for (domIt->reset(); domIt->good(); domIt->next(), k++ ) | ^~ /home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:120:46: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’} 120 | for (domIt->reset(); domIt->good(); domIt->next(), k++ ) | ^~ /home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:124:29: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’} 124 | QuRule->mapTo( domIt->lowerCorner(), domIt->upperCorner(), | ^~ /home/gc/repos/misc/gismo/optional/gsPreCICE/examples/partitioned-heat-conduction.cpp:124:51: error: base operand of ‘->’ has non-pointer type ‘gismo::gsBasis<double>::domainIter’ {aka ‘gismo::gsDomainIteratorWrapper<double>’} 124 | QuRule->mapTo( domIt->lowerCorner(), domIt->upperCorner(), | ^~ gmake[3]: *** [optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/build.make:76: optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/partitioned-heat-conduction.cpp.o] Error 1 gmake[2]: *** [CMakeFiles/Makefile2:1940: optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/all] Error 2 gmake[1]: *** [CMakeFiles/Makefile2:1947: optional/gsPreCICE/examples/CMakeFiles/partitioned-heat-conduction.dir/rule] Error 2 gmake: *** [Makefile:907: partitioned-heat-conduction] Error 2By the way, I edited your instructions above to add a number next to the
-jflag. Without a number, it will use as many threads as parallelizable build targets, which might fill the memory completely and make a system crash.
Hi @Makis, have you pulled the main Gismo? We couldn't replicate the issue (on both MacOS and Ubuntu).