micro-manager
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Error in unit tests with v0.3.0
I am seeing the below errors when running the units.
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ERROR: test_communicate_micro_output (test_adaptivity_parallel.TestGlobalAdaptivity)
Test functionality to communicate micro output from active sims to their associated inactive sims, for a global adaptivity setting.
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Traceback (most recent call last):
File "/Users/bharatmedasani/Software/reviews/micro-manager-0.3.0/tests/unit/test_adaptivity_parallel.py", line 115, in test_communicate_micro_output
adaptivity_controller.communicate_micro_output(is_sim_active, sim_is_associated_to, sim_output)
File "/Users/bharatmedasani/miniconda3/envs/tmp38/lib/python3.8/site-packages/micro_manager/adaptivity/global_adaptivity.py", line 153, in communicate_micro_output
recv_reqs = self._p2p_comm(assoc_active_ids, micro_output)
File "/Users/bharatmedasani/miniconda3/envs/tmp38/lib/python3.8/site-packages/micro_manager/adaptivity/global_adaptivity.py", line 316, in _p2p_comm
req = self._comm.irecv(bufsize, source=recv_rank, tag=tag)
File "mpi4py/MPI/Comm.pyx", line 1502, in mpi4py.MPI.Comm.irecv
File "mpi4py/MPI/msgpickle.pxi", line 417, in mpi4py.MPI.PyMPI_irecv
mpi4py.MPI.Exception: MPI_ERR_RANK: invalid rank
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ERROR: test_update_inactive_sims_global_adaptivity (test_adaptivity_parallel.TestGlobalAdaptivity)
Test functionality to update inactive simulations in a particular setting, for a global adaptivity setting.
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Traceback (most recent call last):
File "/Users/bharatmedasani/Software/reviews/micro-manager-0.3.0/tests/unit/test_adaptivity_parallel.py", line 70, in test_update_inactive_sims_global_adaptivity
is_sim_active, sim_is_associated_to = adaptivity_controller._update_inactive_sims(
File "/Users/bharatmedasani/miniconda3/envs/tmp38/lib/python3.8/site-packages/micro_manager/adaptivity/global_adaptivity.py", line 230, in _update_inactive_sims
recv_reqs = self._p2p_comm(list(to_be_activated_map.keys()), sim_states_and_global_ids)
File "/Users/bharatmedasani/miniconda3/envs/tmp38/lib/python3.8/site-packages/micro_manager/adaptivity/global_adaptivity.py", line 316, in _p2p_comm
req = self._comm.irecv(bufsize, source=recv_rank, tag=tag)
File "mpi4py/MPI/Comm.pyx", line 1502, in mpi4py.MPI.Comm.irecv
File "mpi4py/MPI/msgpickle.pxi", line 417, in mpi4py.MPI.PyMPI_irecv
mpi4py.MPI.Exception: MPI_ERR_RANK: invalid rank
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