Peter

`gather_results` is no longer exported

1

The function `gather_results` is still referenced in the docs by functions such as `plot_all_cell_types` but is not exported anymore (since 19fb2d4). Hence, `gather_results` is neither available in the spacexr namespace,...

`ConstructMetaspots` not compatible with Seurat's `VisiumV2` class

6

Since Seurat v5.1 the default image class (also for non-Visium HD data) is [`VisiumV2`](https://search.r-project.org/CRAN/refmans/Seurat/html/VisiumV2-class.html). Unfortunately, the resulting object has a completely different structure and hence no slot anymore called `coordinates`,...

`ConstructMetaspots`: `seurat_obj` not found

1

Hey Sam, big fan of hdWGCNA. Thanks for continously maintaining it! In the latest dev version (0.4.00, @[9b2e71a](https://github.com/smorabit/hdWGCNA/commit/9b2e71abd0eb5ffd89ca16e8898b915928502f8a)), calling `MetaspotsByGroups` fails due to an error in `ConstructMetaspots`. The function argument...