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Published 20 hours ago • verified publisher icon powellgenomicslab

Why does the highest expression plotted with most negative density? Disagreement between FeaturePlot vs plot_density

Open denvercal1234GitHub opened this issue 2 years ago • 7 comments

Hi there,

Thanks for a great tool.

I plot the joint density of a vector of genes that were scored using AddModuleScore.

When I plotted this score for each cell using FeaturePlot and plot_density. The results are entirely opposite of each other. Would you mind helping me to correct this?

Thank you again. With FeaturePlot: Screen Shot 2022-03-18 at 11 51 56 PM

With plot_density:

Screen Shot 2022-03-18 at 11 52 32 PM

denvercal1234GitHub avatar Mar 18 '22 23:03 denvercal1234GitHub