Basic question of input files

[alx552]

Hi again Pontusk,

I was wondering if I use an input that has not not been filtered for Bi-allelic SNPs only will popstats just automatically ignore those SNPs with more than two alleles or will I have to provide an input that is already filtered for bi-allelic SNPs only?

Best, Alex

[pontussk]

Hi Alex,

Popstats should ignore all triallelic SNPs in your sample. Let me know if you see behaviour different from that.

Best, Pontus

On Mon, Sep 25, 2017 at 11:44 AM, alx552 [email protected] wrote:

Hi again Pontusk,

I was wondering if I use an input that has not not been filtered for Bi-allelic SNPs only will popstats just automatically ignore those SNPs with more than two alleles or will I have to provide an input that is already filtered for bi-allelic SNPs only?

Best, Alex

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