pontussk

Thanks for sending the files. Also posting my reply here with your population labels redacted. The problem is that your data only spans 750kb but the default block size for...

Yes the positive D-statistic suggests gene flow between A and X and/or between B and Y. To see if your D-statistic is significantly deviating from 0, look at the Z-score...

Your tfam file describes four individuals but as you can see your tped file only has two chromosomes represented.

Hi, Thanks for your interest in popstats! Yes you need to put all the four populations in a single tped and tfam file. Best, Pontus On Wed, Dec 9, 2015...

Hi Zhongru, You should be able to find an example here: http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#tr Pontus On Thu, Dec 10, 2015 at 7:22 PM, guzhongru [email protected] wrote: > Hi,Pontus, please can you send...

Hi, Thanks for your note. Please try the attached version of the program that should have the --pi options. THanks for pointing this out. I recommend using population labels in...

Hi, Try this link: https://drive.google.com/file/d/0BzxpmkTnJX5AcEFuQlZUZHRDdVE/view?usp=sharing --FAB should be in that version. Tdiv is an experimental option. On Wed, Nov 9, 2016 at 1:19 AM, stsmall [email protected] wrote: > Hi Pontus,...