pyalign
pyalign copied to clipboard
poke1024
Fast and Versatile Alignments for Python
When installing to virtual environment via pip (i.e., "pip install pyalign"), the following error appears: ValueError: path '/home/runner/work/pyalign/pyalign/pyalign/algorithm/module.cpp' cannot be absolute When trying to install via github (i.e., "pip install...
In rapidfuzz there's a [cdist](https://maxbachmann.github.io/RapidFuzz/Usage/process.html#rapidfuzz.process.cdist) function that computes a matrix of alignment scores between each pair of two collections [in parallel](https://github.com/maxbachmann/RapidFuzz/blob/aa6a88fae4ab331d9c05831ec80af8306eb8b6cd/src/rapidfuzz/process_cpp.hpp#L476). Is there something similar in pyalign, too?
I have not been able to isolate the cause, but the [example notebook](https://mybinder.org/v2/gh/poke1024/pyalign-demo/HEAD?filepath=example.ipynb) keeps crashing for me (with the kernel disconnecting after some steps). It looks somewhat racy/random, but I...
If I `import pyalign` while still inside the source directory, I get the following: ``` RuntimeError: none of ['pyalign.algorithm.native', 'pyalign.algorithm.intel_avx2', 'pyalign.algorithm.apple_m1', 'pyalign.algorithm.generic'] is available ``` (The problem goes away when...
Although it would be possible to dive into the docstrings on the Python interpreter, I would very much like to view the generated API documentation (HTML output). Now, the Readme...
The [project page on PyPI](https://pypi.org/project/pyalign/) lacks a backref to Github due to this. (Most images in the README do not render there, too.)
This looks promising! Can you compare this package with edlib (https://github.com/Martinsos/edlib) for time and memory performances for NW, and semi-global cases?
Hi there, first of, this is an excellent library. I am utilizing it for a research project and had no issues installing and running it on Kaggle. Recently, however, Kaggle...
There are Windows specific steps in the Github actions wheel build workflow https://github.com/poke1024/pyalign/blob/main/.github/workflows/build.yml however `windows` is never specified in the OS matrix, so the wheels are never created. Does the...
