Peter Menzel

Need to think about the output table at the end of the report.

add kaiju

29

Hi! I was wondering if it is possible to make [kaiju](https://kaiju.binf.ku.dk/) available for public usage on usegalaxy.eu. The current public web server for kaiju is always overloaded and will likely...

List of accession numbers for contamination in NR

10

Thanks for addressing the contamination issue (again)! I am interested in cleaning up the NR database before using it for my application. Would it be possible to also make available...

upgrade to datatables v2

5

Hi, are there plans to move DT to [datatables v2](https://datatables.net/blog/2024/datatables-2)? The new search API of v2 looks very interesting. best wishes! --- By filing an issue to this repo, I...

https://github.com/Nextomics/NextPolish v1.4.1 is in bioconda

https://github.com/Nextomics/NextDenovo v2.5.2 is in bioconda

https://github.com/ythuang0522/homopolish#quick-usage-for-polishing-modification-errors however, there is an issue with installing homopolish v0.4.1 via bioconda. when using https://github.com/ythuang0522/homopolish/blob/master/environment.yml (+ homopolish itself) via conda, it fails on libffi.so.6, which might not be available in...

add CONSENT for polishing

1

https://github.com/morispi/CONSENT https://www.nature.com/articles/s41598-020-80757-5

https://github.com/kishwarshafin/pepper

add example files for new Deacon module

3

from paired-end Illumina seq running `deacon filter` in deplete and non-deplete modes (deacon v0.9.0)