bifrost
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Using CompactedDBG cpp object to fetch name of contig in GFA
Hi,
I linked your library and I'm able to use a combination of a KmerIterator
and your CompactedDBG
class to query k-mers in a de Bruijn graph I have stored on my disk as a GFA. However I am looking for a way to map the query results back to the name or index of each contig ("segment" in GFA terminology). Is there an existing way to do this? If not in Bifrost, is there an easy way to adapt it? or would you recommend a different method entirely?
Thanks