plumed
Problems with rendering of new manual
I noticed some problem in the rendering of the manual for 2.7. In particular, these pages seem to be incorrectly interrupted: https://www.plumed.org/doc-v2.7/user-doc/html/_r_e_w_e_i_g_h_t__w_h_a_m.html https://www.plumed.org/doc-v2.7/user-doc/html/trieste-5.html etc (it seems the pattern is that there are problems with the test requires MPI, but I am not sure).
I am actually not able to reproduce the problem on my laptop, so there might be some subtle problem on the Travis-CI configuration. @gtribello any hints about where I should look at?
It is a problem with flushing, I tried to solve it and it worked in my Linux workstation but it does not on Travis
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Il giorno 28 ott 2020, alle ore 18:59, Giovanni [email protected] ha scritto:
I noticed some problem in the rendering of the manual for 2.7. In particular, these pages seem to be incorrectly interrupted: https://www.plumed.org/doc-v2.7/user-doc/html/_r_e_w_e_i_g_h_t__w_h_a_m.html https://www.plumed.org/doc-v2.7/user-doc/html/trieste-5.html etc (it seems the pattern is that there are problems with the test requires MPI, but I am not sure).
I am actually not able to reproduce the problem on my laptop, so there might be some subtle problem on the Travis-CI configuration. @gtribello any hints about where I should look at?
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Urka! Is it possible that when you run with mpirun you have multiple replicas and thus they write multiple times on the example html file? This could be fixed making sure that only the first replica writes (checking Intercomm.Get_rank()).
Maybe here: https://github.com/plumed/plumed2/blob/257b4a19700a4e82a4131d0f3ec4758c8b129dcc/src/cltools/GenExample.cpp#L118
One could make it such that other replicas open ofile as "/dev/null".
That is a good point
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Il giorno 28 ott 2020, alle ore 19:17, Giovanni [email protected] ha scritto:
Maybe here: https://github.com/plumed/plumed2/blob/257b4a19700a4e82a4131d0f3ec4758c8b129dcc/src/cltools/GenExample.cpp#L118
One could make it such that other replicas open ofile as "/dev/null".
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@carlocamilloni if your fix works, we have to backport it to branch v2.7
Sure
On 29 Oct 2020, at 15:26, Giovanni [email protected] wrote:
@carlocamilloni https://github.com/carlocamilloni if your fix works, we have to backport it to branch v2.7
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I think this is still a problem. @gtribello do you know how to fix it? Input files with replicas basically screw up the page in which they are included