Peter Krusche

At this point, hap.py is restricted to maximally two GT entries / diploid species. I started to add support for more general situations at some point here: https://github.com/Illumina/hap.py/blob/master/src/c%2B%2B/include/HapSetMatcher.hh ... but...

There seems to be an issue with the input VCF file where the number of AD fields is not what xcmp expects. I think two things can be done --...

We are working on a simple comparison engine for structural variants which works using overlap / distance-based comparisons, which we hope to make available soon. One part of this is...

Just a quick update: we have released some tools to help with SV typing / validation: https://github.com/illumina/paragraph -- these tools don't implement SV assessment but they do include some information...

Does your boost installation come from the same compiler you're using for hap.py? Different versions of gcc can produce incompatible static libraries. One way to avoid this is to compile...