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Building a database for Eukaryotes and others

Open nvhphuc1206 opened this issue 5 months ago • 3 comments

Hi, Thank you very much for creating a good tool Ganon, I am using Ganon for taxonomic profiling but my target is not only bacteria and viruses, but also to identify species belonging to algae, fungi and crustaceans, generally belonging to the super kingdom Eukaryota. However, I am not sure if Ganon database can do that because when using ganon build with parameter --organism-group I see quite a few unclear examples such as metagenomes, other,.. image So I wonder if Ganon can do the job of identifying Eukaryota species? If so, which organism database should I use?

Hope you can reply me soon. Thanks.

nvhphuc1206 avatar Aug 30 '24 02:08 nvhphuc1206