pioneer-pi

@glennhickey Is it possible that in GAM line, one line edit has no from_length field, it only has to_length field, like the second field of the following sentence: **{"edit": [{"from_length":...

Thank you, I get it. I want to read gam format and i check out the pystream-protobuf. I found that I need to import stream and vg_pb2 to parse GAM...

@adamnovak Thank you! And I have another question: I use vg snarl to get the snarl fie of a variation graph. Can I get the reads that mapping to each...

@jeizenga Thanks for you replying. I use the example code in https://bdsg.readthedocs.io/en/master/rst/tutorial.html :  ``` from bdsg.bdsg import HashGraph gr = HashGraph() seq = ["CGA", "TTGG", "CCGT", "C", "GT", "GATAA",...

Hi, I found the data in [[sv-genotyping](https://github.com/vgteam/sv-genotyping-paper/tree/master)](https://github.com/vgteam/sv-genotyping-paper/tree/master). However, I can't find the specific instructions(parameters) that used for graph construction and map. I find there are all and non-repeat experiments in...

@faithokamoto Sorry. What I am looking for is the reference genome and mapping result. The essay(maybe paper is correct description) is "Genotyping structural variants in pangenome graphs using the vg...

Thanks for your time and assistance!

I am also confused about -R option, each time I use it, I will get an empty file. However, -l is useful. When I use` ./gfatools view -l 1,2,3 my.gfa...