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Integrate Slice Sampling: Covariance Matching MCMC
See #772
Includes:
- Method for Covariance-Adaptive Slice Sampling: Covariance Matching.
- Tests for Covariance Matching method.
- TO DO: Notebooks.
Codecov Report
Merging #896 into master will not change coverage. The diff coverage is
100%.
@@ Coverage Diff @@
## master #896 +/- ##
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Coverage 100% 100%
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Files 66 67 +1
Lines 7052 7180 +128
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+ Hits 7052 7180 +128
| Impacted Files | Coverage Δ | |
|---|---|---|
| pints/_mcmc/_slice_covariance_matching.py | 100% <100%> (ø) |
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| pints/toy/_repressilator_model.py | 100% <0%> (ø) |
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| pints/residuals_diagnostics.py | 100% <0%> (ø) |
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| pints/_mcmc/_population.py | 100% <0%> (ø) |
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| pints/toy/_sir_model.py | 100% <0%> (ø) |
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| pints/_core.py | 100% <0%> (ø) |
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| pints/toy/_sho_model.py | 100% <0%> (ø) |
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| pints/_optimisers/_xnes.py | 100% <0%> (ø) |
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| pints/_mcmc/_mala.py | 100% <0%> (ø) |
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| pints/_mcmc/_rao_blackwell_ac.py | 100% <0%> (ø) |
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| ... and 57 more |
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~@lorcandelaney if the other PR is "correct" does that mean this one can go??~
Sorry it's a different method isn't it?
Is this ready for re-review @ben18785 ?