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Integrate Slice Sampling: Covariance Matching MCMC

Open lorcandelaney opened this issue 6 years ago • 3 comments

See #772

Includes:

  1. Method for Covariance-Adaptive Slice Sampling: Covariance Matching.
  2. Tests for Covariance Matching method.
  3. TO DO: Notebooks.

lorcandelaney avatar Aug 08 '19 15:08 lorcandelaney

Codecov Report

Merging #896 into master will not change coverage. The diff coverage is 100%.

Impacted file tree graph

@@          Coverage Diff           @@
##           master   #896    +/-   ##
======================================
  Coverage     100%   100%            
======================================
  Files          66     67     +1     
  Lines        7052   7180   +128     
======================================
+ Hits         7052   7180   +128
Impacted Files Coverage Δ
pints/_mcmc/_slice_covariance_matching.py 100% <100%> (ø)
pints/toy/_repressilator_model.py 100% <0%> (ø) :arrow_up:
pints/residuals_diagnostics.py 100% <0%> (ø) :arrow_up:
pints/_mcmc/_population.py 100% <0%> (ø) :arrow_up:
pints/toy/_sir_model.py 100% <0%> (ø) :arrow_up:
pints/_core.py 100% <0%> (ø) :arrow_up:
pints/toy/_sho_model.py 100% <0%> (ø) :arrow_up:
pints/_optimisers/_xnes.py 100% <0%> (ø) :arrow_up:
pints/_mcmc/_mala.py 100% <0%> (ø) :arrow_up:
pints/_mcmc/_rao_blackwell_ac.py 100% <0%> (ø) :arrow_up:
... and 57 more

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codecov[bot] avatar Aug 08 '19 15:08 codecov[bot]

~@lorcandelaney if the other PR is "correct" does that mean this one can go??~

Sorry it's a different method isn't it?

MichaelClerx avatar Sep 03 '19 14:09 MichaelClerx

Is this ready for re-review @ben18785 ?

MichaelClerx avatar Feb 17 '20 14:02 MichaelClerx