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Published 20 hours ago • verified publisher icon pinellolab

jaspar2016

Open Brawni opened this issue 4 years ago • 1 comments

Hello there,

Thanks for providing this amazing tool for single-cell analysis..I am running the stream_atac function on command line but it says that it cannot install the R package JASPAR2016. I can install it myself but is there a specification to use the more updated version which I have already installed (JASPAR2020)?

Thanks!

Brawni avatar Mar 19 '20 20:03 Brawni

Hi, Thanks for trying STREAM and your feedback! Unfortunately JASPAR database is hardcoded currently (due to the concerns about software compatibility). But I will try to add the option of JASPAR version in the next release.

huidongchen avatar Mar 20 '20 17:03 huidongchen