stream container issue

[xiaowenchenjax]

I used singularity to pull stream container, then I Run singularity shell to spawn a new shell within stream container and interact with it as though it were a small VM. it looks like this: (base) [chenx@sumner030 software]$ singularity shell stream_latest.sif Singularity stream_latest.sif:~/li-lab/chenx/software>

then,I run python, and import steam, however, i met the following issue: Singularity stream_latest.sif:~/li-lab/chenx/software> python Python 3.7.6 | packaged by conda-forge | (default, Mar 23 2020, 23:03:20) [GCC 7.3.0] on linux Type "help", "copyright", "credits" or "license" for more information. >>> import stream as st Traceback (most recent call last): File "", line 1, in File "/opt/conda/lib/python3.7/site-packages/stream/init.py", line 1, in from .core import * File "/opt/conda/lib/python3.7/site-packages/stream/core.py", line 24, in import umap File "/opt/conda/lib/python3.7/site-packages/umap/init.py", line 1, in from .umap_ import UMAP File "/opt/conda/lib/python3.7/site-packages/umap/umap_.py", line 53, in from umap.layouts import ( File "/opt/conda/lib/python3.7/site-packages/umap/layouts.py", line 36, in "dim": numba.types.int32, File "/opt/conda/lib/python3.7/site-packages/numba/core/decorators.py", line 191, in wrapper disp.enable_caching() File "/opt/conda/lib/python3.7/site-packages/numba/core/dispatcher.py", line 705, in enable_caching self._cache = FunctionCache(self.py_func) File "/opt/conda/lib/python3.7/site-packages/numba/core/caching.py", line 613, in init self._impl = self._impl_class(py_func) File "/opt/conda/lib/python3.7/site-packages/numba/core/caching.py", line 348, in init "for file %r" % (qualname, source_path)) RuntimeError: cannot cach function 'rdist': no locator available for file '/opt/conda/lib/python3.7/site-packages/umap/layouts.py'

Could you give me some suggestions? I supposed container should not have some issue, since we have build all the environment stream need.

Thank you.