Plot Gene Expression

[babramso]

Love the tool! Is there some simple code for plotting the expression of a single gene on the subway plots or other plots as a heatmap? I can generate labels for each cluster and plot those but I want to spot check some genes to see exactly which cluster and how much a single gene is expressing in that cluster relative to others. Thanks

[huidongchen]

Hi, thanks for trying STREAM.

I am not sure if i understand it correctly but it sounds to me that what you need here is a heatmap for clustering solution, which seems independent of trajectory analysis. So I guess some general scRNA-seq tools like scanpy might be more suitable to make such a plot.